SMTL ID : 2zad.1 (1 other biounit)

Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.188, A:E.216, A:D.241, H2O.7, H2O.12 MN.7: 6 residues within 4Å: Chain B: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.188, B:E.216, B:D.241, H2O.24, H2O.24 MN.11: 6 residues within 4Å: Chain C: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.188, C:E.216, C:D.241, H2O.30, H2O.35 MN.17: 6 residues within 4Å: Chain D: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.188, D:E.216, D:D.241, H2O.47, H2O.47 MN.21: 6 residues within 4Å: Chain E: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.188, E:E.216, E:D.241, H2O.54, H2O.58 MN.27: 6 residues within 4Å: Chain F: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.188, F:E.216, F:D.241, H2O.70, H2O.70 MN.31: 6 residues within 4Å: Chain G: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.188, G:E.216, G:D.241, H2O.77, H2O.81 MN.37: 6 residues within 4Å: Chain H: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.188, H:E.216, H:D.241, H2O.94, H2O.94

20 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 7 residues within 4Å: Chain A: K.167, I.170 Chain E: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.3: 6 residues within 4Å: Chain A: E.152, E.153, F.155, L.322, Q.335, G.337 Ligand excluded by PLIP 1PE.4: 5 residues within 4Å: Chain A: E.130, R.156, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.8: 8 residues within 4Å: Chain B: L.166, K.167, I.170 Chain H: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.9: 6 residues within 4Å: Chain B: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.12: 7 residues within 4Å: Chain C: K.167, I.170 Chain G: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.13: 6 residues within 4Å: Chain C: E.152, E.153, F.155, L.322, Q.335, G.337 Ligand excluded by PLIP 1PE.14: 5 residues within 4Å: Chain C: E.130, R.156, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.18: 8 residues within 4Å: Chain D: L.166, K.167, I.170 Chain F: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.19: 6 residues within 4Å: Chain D: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.22: 7 residues within 4Å: Chain C: Y.206, Q.207, G.209, I.210, D.211 Chain E: K.167, I.170 Ligand excluded by PLIP 1PE.23: 6 residues within 4Å: Chain E: E.152, E.153, F.155, L.322, Q.335, G.337 Ligand excluded by PLIP 1PE.24: 5 residues within 4Å: Chain E: E.130, R.156, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.28: 8 residues within 4Å: Chain B: Y.206, Q.207, G.209, I.210, D.211 Chain F: L.166, K.167, I.170 Ligand excluded by PLIP 1PE.29: 6 residues within 4Å: Chain F: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.32: 7 residues within 4Å: Chain A: Y.206, Q.207, G.209, I.210, D.211 Chain G: K.167, I.170 Ligand excluded by PLIP 1PE.33: 6 residues within 4Å: Chain G: E.152, E.153, F.155, L.322, Q.335, G.337 Ligand excluded by PLIP 1PE.34: 5 residues within 4Å: Chain G: E.130, R.156, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.38: 8 residues within 4Å: Chain D: Y.206, Q.207, G.209, I.210, D.211 Chain H: L.166, K.167, I.170 Ligand excluded by PLIP 1PE.39: 6 residues within 4Å: Chain H: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 3 residues within 4Å: Chain A: Y.46, L.298, R.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.330, A:R.330 PEG.6: 5 residues within 4Å: Chain A: F.53, R.59 Chain F: A.69, E.72, M.73 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain A Hydrogen bonds: F:A.69, A:R.59, A:R.59 PEG.10: 3 residues within 4Å: Chain A: Y.82, L.122 Chain B: Y.82 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.82 Water bridges: A:L.122, A:E.279, B:L.122, B:E.279 PEG.15: 3 residues within 4Å: Chain C: Y.46, L.298, R.330 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.330, C:R.330 PEG.16: 5 residues within 4Å: Chain C: F.53, R.59 Chain H: A.69, E.72, M.73 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain C Hydrogen bonds: H:A.69, C:R.59, C:R.59 PEG.20: 3 residues within 4Å: Chain C: Y.82, L.122 Chain D: Y.82 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Y.82 Water bridges: C:L.122, C:E.279, D:L.122, D:E.279 PEG.25: 3 residues within 4Å: Chain E: Y.46, L.298, R.330 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.330, E:R.330 PEG.26: 5 residues within 4Å: Chain D: A.69, E.72, M.73 Chain E: F.53, R.59 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:A.69, E:R.59, E:R.59 PEG.30: 3 residues within 4Å: Chain E: Y.82, L.122 Chain F: Y.82 5 PLIP interactions: 2 interactions with chain F, 3 interactions with chain E Water bridges: F:L.122, F:E.279, E:L.122, E:E.279 Hydrogen bonds: E:Y.82 PEG.35: 3 residues within 4Å: Chain G: Y.46, L.298, R.330 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.330, G:R.330 PEG.36: 5 residues within 4Å: Chain B: A.69, E.72, M.73 Chain G: F.53, R.59 3 PLIP interactions: 2 interactions with chain G, 1 interactions with chain B Hydrogen bonds: G:R.59, G:R.59, B:A.69 PEG.40: 3 residues within 4Å: Chain G: Y.82, L.122 Chain H: Y.82 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain H Hydrogen bonds: G:Y.82 Water bridges: G:L.122, G:E.279, H:L.122, H:E.279

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padmanabhan, B. et al., Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8. To be Published

Release Date

2008-04-08

Peptides

Muconate cycloisomerase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Muconate cycloisomerase

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