- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ALA: ALANINE(Non-covalent)
ALA.2: 9 residues within 4Å:- Chain A: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.3
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.20
- Hydrogen bonds: A:K.159, A:K.161, A:D.319
ALA.5: 8 residues within 4Å:- Chain B: T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.6
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.159, B:K.161, B:D.319
ALA.8: 9 residues within 4Å:- Chain C: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.9
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:T.134, C:K.161, C:D.319
ALA.11: 8 residues within 4Å:- Chain D: T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.12
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.134, D:K.159, D:K.161, D:D.319
ALA.14: 9 residues within 4Å:- Chain E: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.15
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:F.20
- Hydrogen bonds: E:T.134, E:K.159, E:K.161, E:D.319
ALA.17: 8 residues within 4Å:- Chain F: T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.18
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:T.134, F:K.159, F:K.161, F:D.319
ALA.20: 9 residues within 4Å:- Chain G: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.21
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:K.161, G:D.319
ALA.23: 8 residues within 4Å:- Chain H: T.134, K.159, K.161, C.292, M.293, D.317, D.319
- Ligands: PHE.24
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:K.159, H:K.161, H:D.319
- 8 x PHE: PHENYLALANINE(Non-covalent)
PHE.3: 16 residues within 4Å:- Chain A: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.1, ALA.2
14 PLIP interactions:14 interactions with chain A,- Hydrophobic interactions: A:F.20, A:M.293
- Hydrogen bonds: A:N.190, A:K.265, A:C.292, A:D.317
- Water bridges: A:R.54, A:E.216, A:D.241, A:N.263, A:C.292
- Salt bridges: A:K.159, A:K.161, A:K.265
PHE.6: 16 residues within 4Å:- Chain B: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.4, ALA.5
13 PLIP interactions:13 interactions with chain B,- Hydrophobic interactions: B:F.20, B:M.293
- Hydrogen bonds: B:N.190, B:K.265, B:C.292, B:D.317
- Water bridges: B:R.54, B:E.242, B:N.263, B:C.292
- Salt bridges: B:K.159, B:K.161, B:K.265
PHE.9: 15 residues within 4Å:- Chain C: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294
- Ligands: MG.7, ALA.8
12 PLIP interactions:12 interactions with chain C,- Hydrophobic interactions: C:F.20, C:M.293
- Hydrogen bonds: C:N.190, C:K.265, C:C.292
- Water bridges: C:R.54, C:E.242, C:N.263, C:C.292
- Salt bridges: C:K.159, C:K.161, C:K.265
PHE.12: 16 residues within 4Å:- Chain D: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.10, ALA.11
13 PLIP interactions:13 interactions with chain D,- Hydrophobic interactions: D:F.20, D:M.293
- Hydrogen bonds: D:N.190, D:K.265, D:C.292
- Water bridges: D:K.159, D:D.241, D:D.241, D:E.242, D:C.292
- Salt bridges: D:K.159, D:K.161, D:K.265
PHE.15: 16 residues within 4Å:- Chain E: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.13, ALA.14
13 PLIP interactions:13 interactions with chain E,- Hydrophobic interactions: E:F.20, E:M.293
- Hydrogen bonds: E:N.190, E:K.265, E:C.292
- Water bridges: E:R.54, E:D.241, E:D.241, E:N.263, E:C.292
- Salt bridges: E:K.159, E:K.161, E:K.265
PHE.18: 16 residues within 4Å:- Chain F: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.16, ALA.17
13 PLIP interactions:13 interactions with chain F,- Hydrophobic interactions: F:F.20, F:M.293
- Hydrogen bonds: F:N.190, F:K.265, F:C.292
- Water bridges: F:R.54, F:E.216, F:E.242, F:N.263, F:C.292
- Salt bridges: F:K.159, F:K.161, F:K.265
PHE.21: 15 residues within 4Å:- Chain G: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294
- Ligands: MG.19, ALA.20
14 PLIP interactions:14 interactions with chain G,- Hydrophobic interactions: G:F.20, G:M.293
- Hydrogen bonds: G:N.190, G:K.265, G:C.292, G:D.317
- Water bridges: G:R.54, G:E.216, G:E.242, G:N.263, G:C.292
- Salt bridges: G:K.159, G:K.161, G:K.265
PHE.24: 16 residues within 4Å:- Chain H: Y.16, F.20, R.54, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, G.294, D.317
- Ligands: MG.22, ALA.23
14 PLIP interactions:14 interactions with chain H,- Hydrophobic interactions: H:F.20, H:M.293
- Hydrogen bonds: H:N.190, H:K.265, H:C.292, H:D.317
- Water bridges: H:K.159, H:E.216, H:D.241, H:E.242, H:C.292
- Salt bridges: H:K.159, H:K.161, H:K.265
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kalyanaraman, C. et al., Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008)
- Release Date
- 2008-11-25
- Peptides
- Muconate cycloisomerase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ALA: ALANINE(Non-covalent)
- 8 x PHE: PHENYLALANINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kalyanaraman, C. et al., Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008)
- Release Date
- 2008-11-25
- Peptides
- Muconate cycloisomerase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D