- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ALA: ALANINE(Non-covalent)
ALA.2: 10 residues within 4Å:- Chain A: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.3
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.20
- Hydrogen bonds: A:K.159, A:K.161, A:D.319
ALA.5: 10 residues within 4Å:- Chain B: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.6
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.20
- Hydrogen bonds: B:K.159, B:K.161, B:D.319
ALA.8: 10 residues within 4Å:- Chain C: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.9
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.20
- Hydrogen bonds: C:T.134, C:K.159, C:K.161, C:D.319
ALA.11: 10 residues within 4Å:- Chain D: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.12
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:F.20
- Hydrogen bonds: D:T.134, D:K.159, D:K.161, D:D.319
ALA.14: 10 residues within 4Å:- Chain E: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.15
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:F.20
- Hydrogen bonds: E:T.134, E:K.159, E:K.161, E:D.319
ALA.17: 10 residues within 4Å:- Chain F: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.18
5 PLIP interactions:5 interactions with chain F- Hydrophobic interactions: F:F.20
- Hydrogen bonds: F:T.134, F:K.159, F:K.161, F:D.319
ALA.20: 10 residues within 4Å:- Chain G: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.21
4 PLIP interactions:4 interactions with chain G- Hydrophobic interactions: G:F.20
- Hydrogen bonds: G:K.159, G:K.161, G:D.319
ALA.23: 10 residues within 4Å:- Chain H: F.20, T.134, K.159, K.161, C.292, M.293, D.317, D.319, M.323
- Ligands: LYS.24
4 PLIP interactions:4 interactions with chain H- Hydrophobic interactions: H:F.20
- Hydrogen bonds: H:K.159, H:K.161, H:D.319
- 8 x LYS: LYSINE(Non-covalent)
LYS.3: 14 residues within 4Å:- Chain A: F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, D.317
- Ligands: MG.1, ALA.2
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:F.20, A:I.22
- Hydrogen bonds: A:S.27, A:S.27, A:N.190, A:N.190, A:K.265, A:C.292, A:D.317
- Water bridges: A:R.54, A:R.54, A:E.216, A:N.263, A:C.292
- Salt bridges: A:K.159, A:K.161, A:K.265
LYS.6: 16 residues within 4Å:- Chain B: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, D.317
- Ligands: MG.4, ALA.5
17 PLIP interactions:17 interactions with chain B- Hydrophobic interactions: B:F.20, B:I.22
- Hydrogen bonds: B:S.27, B:S.27, B:N.190, B:K.265, B:C.292, B:D.317
- Water bridges: B:Y.16, B:R.54, B:R.54, B:E.242, B:N.263, B:C.292
- Salt bridges: B:K.159, B:K.161, B:K.265
LYS.9: 15 residues within 4Å:- Chain C: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, D.317
- Ligands: MG.7, ALA.8
17 PLIP interactions:17 interactions with chain C,- Hydrophobic interactions: C:F.20, C:I.22
- Hydrogen bonds: C:S.27, C:N.190, C:K.265, C:C.292
- Water bridges: C:Y.16, C:Y.16, C:S.25, C:R.54, C:R.54, C:E.242, C:N.263, C:C.292
- Salt bridges: C:K.159, C:K.161, C:K.265
LYS.12: 16 residues within 4Å:- Chain D: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, D.317
- Ligands: MG.10, ALA.11
17 PLIP interactions:17 interactions with chain D,- Hydrophobic interactions: D:F.20, D:I.22
- Hydrogen bonds: D:Y.16, D:Y.16, D:S.27, D:D.188, D:N.190, D:K.265, D:C.292
- Water bridges: D:R.54, D:R.54, D:E.242, D:N.263, D:C.292
- Salt bridges: D:K.159, D:K.161, D:K.265
LYS.15: 14 residues within 4Å:- Chain E: F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, D.317
- Ligands: MG.13, ALA.14
16 PLIP interactions:16 interactions with chain E,- Hydrophobic interactions: E:F.20, E:I.22
- Hydrogen bonds: E:S.27, E:S.27, E:N.190, E:N.190, E:K.265, E:C.292
- Water bridges: E:Y.16, E:R.54, E:R.54, E:N.263, E:C.292
- Salt bridges: E:K.159, E:K.161, E:K.265
LYS.18: 16 residues within 4Å:- Chain F: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, D.317
- Ligands: MG.16, ALA.17
15 PLIP interactions:15 interactions with chain F,- Hydrophobic interactions: F:F.20, F:I.22
- Hydrogen bonds: F:S.27, F:S.27, F:N.190, F:K.265, F:C.292
- Water bridges: F:R.54, F:R.54, F:E.242, F:N.263, F:C.292
- Salt bridges: F:K.159, F:K.161, F:K.265
LYS.21: 15 residues within 4Å:- Chain G: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, D.317
- Ligands: MG.19, ALA.20
18 PLIP interactions:18 interactions with chain G,- Hydrophobic interactions: G:F.20, G:I.22
- Hydrogen bonds: G:S.27, G:N.190, G:K.265, G:C.292, G:D.317
- Water bridges: G:Y.16, G:S.25, G:S.27, G:R.54, G:R.54, G:E.242, G:N.263, G:C.292
- Salt bridges: G:K.159, G:K.161, G:K.265
LYS.24: 16 residues within 4Å:- Chain H: Y.16, F.20, I.22, S.27, K.159, K.161, D.188, N.190, E.216, D.241, K.265, C.292, M.293, D.317
- Ligands: MG.22, ALA.23
16 PLIP interactions:16 interactions with chain H,- Hydrophobic interactions: H:F.20, H:I.22
- Hydrogen bonds: H:Y.16, H:S.27, H:N.190, H:K.265, H:C.292, H:D.317
- Water bridges: H:R.54, H:R.54, H:E.242, H:N.263, H:C.292
- Salt bridges: H:K.159, H:K.161, H:K.265
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kalyanaraman, C. et al., Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008)
- Release Date
- 2008-11-25
- Peptides
- Muconate cycloisomerase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x ALA: ALANINE(Non-covalent)
- 8 x LYS: LYSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kalyanaraman, C. et al., Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening. Structure (2008)
- Release Date
- 2008-11-25
- Peptides
- Muconate cycloisomerase: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
AF
BG
CH
D