SMTL ID : 2zad.2 (1 other biounit)

Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-octamer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.188, A:E.216, A:D.241, H2O.13, H2O.13 MN.5: 6 residues within 4Å: Chain B: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.188, B:E.216, B:D.241, H2O.20, H2O.24 MN.10: 6 residues within 4Å: Chain C: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.188, C:E.216, C:D.241, H2O.36, H2O.36 MN.14: 6 residues within 4Å: Chain D: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:D.188, D:E.216, D:D.241, H2O.43, H2O.48 MN.19: 6 residues within 4Å: Chain E: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.188, E:E.216, E:D.241, H2O.60, H2O.60 MN.23: 6 residues within 4Å: Chain F: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:D.188, F:E.216, F:D.241, H2O.67, H2O.71 MN.28: 6 residues within 4Å: Chain G: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.188, G:E.216, G:D.241, H2O.83, H2O.84 MN.32: 6 residues within 4Å: Chain H: K.159, D.188, N.190, E.216, D.241, N.263 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:D.188, H:E.216, H:D.241, H2O.90, H2O.95

24 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 9 residues within 4Å: Chain A: L.166, K.167, I.170, E.200 Chain E: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.3: 6 residues within 4Å: Chain A: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.4: 5 residues within 4Å: Chain A: R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.6: 6 residues within 4Å: Chain B: E.130, R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.7: 10 residues within 4Å: Chain B: R.203, K.228, F.229, F.232, H.233 Chain F: H.233 Chain H: F.232, E.257 Ligands: 1PE.25, 1PE.34 Ligand excluded by PLIP 1PE.8: 7 residues within 4Å: Chain B: Y.206, Q.207, G.209, I.210, D.211 Chain F: K.167, I.170 Ligand excluded by PLIP 1PE.11: 9 residues within 4Å: Chain C: L.166, K.167, I.170, E.200 Chain G: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.12: 6 residues within 4Å: Chain C: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.13: 5 residues within 4Å: Chain C: R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.15: 6 residues within 4Å: Chain D: E.130, R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.16: 10 residues within 4Å: Chain D: R.203, K.228, F.229, F.232, H.233 Chain F: F.232, E.257 Chain H: H.233 Ligands: 1PE.25, 1PE.34 Ligand excluded by PLIP 1PE.17: 7 residues within 4Å: Chain D: Y.206, Q.207, G.209, I.210, D.211 Chain H: K.167, I.170 Ligand excluded by PLIP 1PE.20: 9 residues within 4Å: Chain C: Y.206, Q.207, G.209, I.210, D.211 Chain E: L.166, K.167, I.170, E.200 Ligand excluded by PLIP 1PE.21: 6 residues within 4Å: Chain E: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.22: 5 residues within 4Å: Chain E: R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.24: 6 residues within 4Å: Chain F: E.130, R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.25: 10 residues within 4Å: Chain B: F.232, E.257 Chain D: H.233 Chain F: R.203, K.228, F.229, F.232, H.233 Ligands: 1PE.7, 1PE.16 Ligand excluded by PLIP 1PE.26: 7 residues within 4Å: Chain D: K.167, I.170 Chain F: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP 1PE.29: 9 residues within 4Å: Chain A: Y.206, Q.207, G.209, I.210, D.211 Chain G: L.166, K.167, I.170, E.200 Ligand excluded by PLIP 1PE.30: 6 residues within 4Å: Chain G: Y.46, L.298, F.329, R.330, G.331, K.332 Ligand excluded by PLIP 1PE.31: 5 residues within 4Å: Chain G: R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.33: 6 residues within 4Å: Chain H: E.130, R.156, V.157, K.184, E.314, F.315 Ligand excluded by PLIP 1PE.34: 10 residues within 4Å: Chain B: H.233 Chain D: F.232, E.257 Chain H: R.203, K.228, F.229, F.232, H.233 Ligands: 1PE.7, 1PE.16 Ligand excluded by PLIP 1PE.35: 7 residues within 4Å: Chain B: K.167, I.170 Chain H: Y.206, Q.207, G.209, I.210, D.211 Ligand excluded by PLIP

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 5 residues within 4Å: Chain B: Y.46, L.298, R.330, G.331, K.332 1 PLIP interactions: 1 interactions with chain B Water bridges: B:R.330 PEG.18: 5 residues within 4Å: Chain D: Y.46, L.298, R.330, G.331, K.332 1 PLIP interactions: 1 interactions with chain D Water bridges: D:R.330 PEG.27: 5 residues within 4Å: Chain F: Y.46, L.298, R.330, G.331, K.332 1 PLIP interactions: 1 interactions with chain F Water bridges: F:R.330 PEG.36: 5 residues within 4Å: Chain H: Y.46, L.298, R.330, G.331, K.332 1 PLIP interactions: 1 interactions with chain H Water bridges: H:R.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Padmanabhan, B. et al., Crystal Structure of Muconate Cycloisomerase from Thermotoga maritima MSB8. To be Published

Release Date

2008-04-08

Peptides

Muconate cycloisomerase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
C

D
D

E
C

F
D

G
C

H
D

Muconate cycloisomerase

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