SMTL ID : 2zs8.1

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) co-crystallized with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: S.98, V.99, A.100, V.101, G.102, K.103, S.104, R.108, H.179, E.201, R.238, M.242, A.246, F.247 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:A.100, A:V.101, A:G.102, A:K.103, A:S.104, A:S.104, A:S.104, A:S.104, A:R.108, A:R.238 Water bridges: A:R.238 Salt bridges: A:K.103, A:K.103, A:R.238 pi-Cation interactions: A:H.179 ADP.7: 14 residues within 4Å: Chain B: S.98, V.99, A.100, V.101, G.102, K.103, S.104, R.108, H.179, E.201, R.238, M.242, A.246, F.247 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.100, B:V.101, B:G.102, B:K.103, B:S.104, B:S.104, B:S.104, B:S.104, B:R.108, B:H.179, B:R.238 Water bridges: B:T.105, B:R.238 Salt bridges: B:K.103, B:K.103, B:R.238 pi-Cation interactions: B:H.179

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.177, S.178, H.179, L.180, I.185 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.179, A:L.180 GOL.3: 7 residues within 4Å: Chain A: L.206, F.218, D.219, S.221, R.291, T.293, R.310 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.221, A:T.293, A:R.310 GOL.4: 6 residues within 4Å: Chain A: R.15, Q.43, I.44, D.45, E.48, S.303 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.15, A:R.15, A:D.45, A:E.48, A:E.48 GOL.5: 2 residues within 4Å: Chain A: C.173, P.175 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain A: R.122, R.193, H.194 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.122 Water bridges: A:R.87, A:D.170, A:R.193 GOL.8: 5 residues within 4Å: Chain B: Y.177, S.178, H.179, L.180, I.185 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.179, B:L.180 GOL.9: 7 residues within 4Å: Chain B: L.206, F.218, D.219, S.221, R.291, T.293, R.310 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.221, B:R.310 GOL.10: 6 residues within 4Å: Chain B: R.15, Q.43, I.44, D.45, E.48, S.303 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.15, B:R.15, B:D.45, B:E.48, B:E.48, B:E.48 GOL.11: 2 residues within 4Å: Chain B: C.173, P.175 No protein-ligand interaction detected (PLIP) GOL.12: 3 residues within 4Å: Chain B: R.122, R.193, H.194 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.122 Water bridges: B:R.87, B:D.170, B:R.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chetnani, B. et al., Mycobacterium tuberculosis pantothenate kinase: possible changes in location of ligands during enzyme action. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-07-21

Peptides

Pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Pantothenate kinase

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