- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 14 residues within 4Å:- Chain A: V.99, A.100, V.101, G.102, K.103, S.104, R.108, H.179, R.238, M.242, A.246
- Ligands: ATP.1, GOL.8, FLC.9
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:A.100, A:V.101, A:G.102, A:K.103, A:S.104, A:S.104, A:R.108, A:R.238
- Salt bridges: A:K.103, A:K.103, A:R.238
ADP.15: 14 residues within 4Å:- Chain B: V.99, A.100, V.101, G.102, K.103, S.104, R.108, H.179, R.238, M.242, A.246
- Ligands: ATP.14, GOL.21, FLC.22
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:A.100, B:V.101, B:G.102, B:K.103, B:S.104, B:S.104, B:R.108, B:R.238
- Salt bridges: B:K.103, B:K.103, B:R.238
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: R.15, Q.43, D.45, L.47, E.48, S.303, I.304
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.15, A:R.15, A:Q.43, A:E.48, A:E.48, A:I.304
GOL.4: 5 residues within 4Å:- Chain A: F.218, S.221, R.291, T.293, R.310
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.215, A:F.218, A:S.221, A:R.310
GOL.5: 4 residues within 4Å:- Chain A: L.125, T.127, Q.190
- Ligands: FLC.9
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.127, A:T.127, A:Y.177
- Water bridges: A:T.127, A:Q.190
GOL.6: 4 residues within 4Å:- Chain A: Y.10, R.289, P.290, R.308
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.289, A:R.308
GOL.7: 8 residues within 4Å:- Chain A: D.225, A.226, R.227, R.289, R.297, K.298, D.299, R.306
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:R.289, A:R.297, A:K.298, A:D.299, A:D.299
- Water bridges: A:R.297, A:R.306
GOL.8: 4 residues within 4Å:- Chain A: R.38, G.39, R.108
- Ligands: ADP.2
1 PLIP interactions:1 interactions with chain A- Water bridges: A:L.40
GOL.16: 7 residues within 4Å:- Chain B: R.15, Q.43, D.45, L.47, E.48, S.303, I.304
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.15, B:R.15, B:Q.43, B:E.48, B:E.48, B:E.48, B:I.304
GOL.17: 5 residues within 4Å:- Chain B: F.218, S.221, R.291, T.293, R.310
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.215, B:F.218, B:S.221, B:R.310
GOL.18: 4 residues within 4Å:- Chain B: L.125, T.127, Q.190
- Ligands: FLC.22
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.127, B:Y.177
- Water bridges: B:T.127, B:Q.190
GOL.19: 4 residues within 4Å:- Chain B: Y.10, R.289, P.290, R.308
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.289, B:R.308
GOL.20: 8 residues within 4Å:- Chain B: D.225, A.226, R.227, R.289, R.297, K.298, D.299, R.306
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.225, B:R.289, B:R.297, B:K.298, B:D.299
- Water bridges: B:R.297, B:R.306
GOL.21: 4 residues within 4Å:- Chain B: R.38, G.39, R.108
- Ligands: ADP.15
1 PLIP interactions:1 interactions with chain B- Water bridges: B:L.40
- 2 x FLC: CITRATE ANION(Non-covalent)
FLC.9: 7 residues within 4Å:- Chain A: Y.177, S.178, H.179, L.180
- Ligands: ATP.1, ADP.2, GOL.5
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.177, A:Y.177, A:H.179, A:L.180
- Salt bridges: A:H.179
FLC.22: 7 residues within 4Å:- Chain B: Y.177, S.178, H.179, L.180
- Ligands: ATP.14, ADP.15, GOL.18
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.177, B:Y.177, B:H.179, B:L.180
- Salt bridges: B:H.179
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.10: 5 residues within 4Å:- Chain A: R.122, D.124, V.191, V.192, R.193
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.124, A:R.193
NA.23: 5 residues within 4Å:- Chain B: R.122, D.124, V.191, V.192, R.193
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.124, B:R.193
- 6 x ACT: ACETATE ION(Non-functional Binders)
ACT.11: 1 residues within 4Å:- Chain A: P.175
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.175
ACT.12: 2 residues within 4Å:- Chain A: H.194, D.196
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.194
ACT.13: 7 residues within 4Å:- Chain A: R.87, P.88, P.90, G.168, S.169, H.194, P.195
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:R.87, A:P.90, A:H.194
- Hydrogen bonds: A:H.194
- Salt bridges: A:R.87
ACT.24: 1 residues within 4Å:- Chain B: P.175
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:P.175
ACT.25: 2 residues within 4Å:- Chain B: H.194, D.196
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:H.194
ACT.26: 7 residues within 4Å:- Chain B: R.87, P.88, P.90, G.168, S.169, H.194, P.195
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:R.87, B:P.90, B:H.194
- Hydrogen bonds: B:H.194
- Salt bridges: B:R.87
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chetnani, B. et al., Mycobacterium tuberculosis pantothenate kinase: possible changes in location of ligands during enzyme action. Acta Crystallogr.,Sect.D (2009)
- Release Date
- 2009-07-21
- Peptides
- Pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FLC: CITRATE ANION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chetnani, B. et al., Mycobacterium tuberculosis pantothenate kinase: possible changes in location of ligands during enzyme action. Acta Crystallogr.,Sect.D (2009)
- Release Date
- 2009-07-21
- Peptides
- Pantothenate kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A