SMTL ID : 2zu5.1

complex structure of SARS-CoV 3CL protease with TG-0205486

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x ZU5: N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-[(1R)-4-cyclopropyl-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}butyl]-L-leucinamide(Non-covalent)

ZU5.1: 23 residues within 4Å: Chain A: T.25, T.26, L.27, H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, Q.189, T.190, A.191, Q.192 Chain B: S.1 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.25, A:L.27, A:L.27, A:H.41, A:M.49, A:P.168, A:D.187, A:Q.189 Hydrogen bonds: A:G.143, A:C.145, A:H.164, A:E.166, A:E.166, A:Q.189, B:S.1 ZU5.2: 23 residues within 4Å: Chain A: S.1 Chain B: T.25, T.26, L.27, H.41, M.49, F.140, L.141, N.142, G.143, S.144, C.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, Q.189, T.190, A.191, Q.192 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.25, B:L.27, B:L.27, B:H.41, B:M.49, B:P.168, B:D.187, B:Q.189 Hydrogen bonds: B:G.143, B:C.145, B:H.164, B:E.166, B:E.166, B:E.166, B:Q.189, A:S.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, C.C. et al., Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds. J.Biol.Chem. (2009)

Release Date

2009-01-13

Peptides

3C-like proteinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase

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