3a6n.1 | SWISS-MODEL Template Library

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SMTL ID : 3a6n.1

The nucleosome containing a testis-specific histone variant, human H3T

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	3 residues within 4Å: Chain A: M.124, P.125, K.126 Ligand excluded by PLIP
CL.2:	5 residues within 4Å: Chain C: G.50, A.51 Chain D: T.94, S.95 Chain J: T.112 Ligand excluded by PLIP
CL.4:	2 residues within 4Å: Chain E: P.125, K.126 Ligand excluded by PLIP
CL.5:	6 residues within 4Å: Chain G: G.48, A.49, G.50, A.51 Chain H: T.94, S.95 Ligand excluded by PLIP

8 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.3:	1 residues within 4Å: Chain D: V.52 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:V.52, H₂O.2
MN.6:	2 residues within 4Å: Chain I: G.68 Chain J: C.79 No protein-ligand interaction detected (PLIP)
MN.7:	2 residues within 4Å: Chain I: T.120, G.121 No protein-ligand interaction detected (PLIP)
MN.8:	1 residues within 4Å: Chain I: A.133 No protein-ligand interaction detected (PLIP)
MN.9:	2 residues within 4Å: Chain J: G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.10:	2 residues within 4Å: Chain J: G.121, G.122 No protein-ligand interaction detected (PLIP)
MN.11:	1 residues within 4Å: Chain J: G.71 No protein-ligand interaction detected (PLIP)
MN.12:	1 residues within 4Å: Chain J: G.134 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Tachiwana, H. et al., Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-05-26

Peptides

Histone H3.1t: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.1t

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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