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SMTL ID : 3ayw.1

Crystal Structure of Human Nucleosome Core Particle Containing H3K56Q mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1:	3 residues within 4Å: Chain A: M.124, P.125, K.126 Ligand excluded by PLIP
CL.3:	5 residues within 4Å: Chain C: G.48, G.50 Chain D: T.94, S.95 Chain J: T.112 Ligand excluded by PLIP
CL.4:	2 residues within 4Å: Chain E: P.125, K.126 Ligand excluded by PLIP
CL.5:	5 residues within 4Å: Chain G: G.48, A.49, G.50 Chain H: T.94, S.95 Ligand excluded by PLIP

11 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.2:	2 residues within 4Å: Chain C: E.68 Chain D: V.52 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:V.52
MN.6:	2 residues within 4Å: Chain I: G.68 Chain J: C.79 No protein-ligand interaction detected (PLIP)
MN.7:	3 residues within 4Å: Chain I: G.121, G.122 Chain J: C.25 No protein-ligand interaction detected (PLIP)
MN.8:	2 residues within 4Å: Chain I: C.132, A.133 No protein-ligand interaction detected (PLIP)
MN.9:	1 residues within 4Å: Chain I: G.100 No protein-ligand interaction detected (PLIP)
MN.10:	2 residues within 4Å: Chain I: G.78 Chain J: C.69 No protein-ligand interaction detected (PLIP)
MN.11:	3 residues within 4Å: Chain J: T.38, G.39, G.40 No protein-ligand interaction detected (PLIP)
MN.12:	1 residues within 4Å: Chain J: G.121 No protein-ligand interaction detected (PLIP)
MN.13:	2 residues within 4Å: Chain J: G.71, A.72 No protein-ligand interaction detected (PLIP)
MN.14:	1 residues within 4Å: Chain J: G.134 No protein-ligand interaction detected (PLIP)
MN.15:	2 residues within 4Å: Chain I: T.45 Chain J: C.101 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Iwasaki, W. et al., Comprehensive Structural Analysis of Mutant Nucleosomes Containing Lysine to Glutamine (KQ) Substitutions in the H3 and H4 Histone-Fold Domains. Biochemistry (2011)

Release Date

2011-09-21

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1-B/E: CG
Histone H2B type 1-J: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Histone H3.1

Histone H4

Histone H2A type 1-B/E

Histone H2B type 1-J

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