SMTL ID : 3b08.4 (3 other biounits)

Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 9 residues within 4Å: Chain A: Q.138, K.139, E.140, S.141 Chain B: E.47, A.50, R.51, A.53, G.54 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:E.140 Water bridges: A:T.142, B:E.47, B:E.47, B:E.47, B:E.47

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.11, C.14, C.25, C.28 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.11, B:C.14, B:C.25, B:C.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, Y. et al., Specific recognition of linear ubiquitin chains by the Npl4 zinc finger (NZF) domain of the HOIL-1L subunit of the linear ubiquitin chain assembly complex. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-12-14

Peptides

Polyubiquitin-C: A
RanBP-type and C3HC4-type zinc finger-containing protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

Polyubiquitin-C

RanBP-type and C3HC4-type zinc finger-containing protein 1

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