SMTL ID : 9avw.1

Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-2-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: T.66, H.68 Chain C: T.12 4 PLIP interactions: 4 interactions with chain A Water bridges: A:T.66, A:T.66, A:T.66 Salt bridges: A:H.68 SO4.2: 1 residues within 4Å: Chain A: K.48 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.48 Salt bridges: A:K.48 SO4.3: 3 residues within 4Å: Chain B: R.118, R.148, L.149 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.149 Salt bridges: B:R.118 SO4.4: 4 residues within 4Å: Chain B: T.83, T.85, K.87, E.110 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.83, B:T.85, B:T.85, B:E.110 Water bridges: B:L.84 Salt bridges: B:K.87 SO4.5: 3 residues within 4Å: Chain B: R.118, Q.125, R.148 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.125 Salt bridges: B:R.118, B:R.148 SO4.7: 2 residues within 4Å: Chain B: Q.125 Chain C: H.16 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Salt bridges: C:H.16 Hydrogen bonds: B:Q.125 Water bridges: B:Q.125, B:Q.125

1 x ZN: ZINC ION(Non-covalent)

ZN.6: 4 residues within 4Å: Chain C: C.8, C.11, C.22, C.25 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.8, C:C.11, C:C.22, C:C.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michel, M.A. et al., Structure of TAB2 NZF domain bound to K6 / Lys6-linked diubiquitin. To be published

Release Date

2024-07-31

Peptides

Ubiquitin: AB
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ubiquitin

TGF-beta-activated kinase 1 and MAP3K7-binding protein 2

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