SMTL ID : 3znz.1

Crystal structure of OTULIN OTU domain (C129A) in complex with Met1- di ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: Q.194, R.197, N.198 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.198 Water bridges: A:R.197 Salt bridges: A:R.197 SO4.2: 2 residues within 4Å: Chain A: W.71, R.222 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.71 Salt bridges: A:R.222 SO4.3: 1 residues within 4Å: Chain A: R.20 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.20 SO4.4: 3 residues within 4Å: Chain A: R.261 Chain B: G.35, P.37 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.25, A:R.261, A:R.261 Salt bridges: A:R.261 SO4.5: 3 residues within 4Å: Chain A: G.204, H.205 Chain B: K.139 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Water bridges: A:H.205, A:H.205 Salt bridges: A:H.205, B:K.139 SO4.6: 5 residues within 4Å: Chain A: D.187, T.188 Chain B: R.42, Q.49, R.72 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.187, A:T.188, B:Q.49, B:Q.49 Water bridges: B:R.42 Salt bridges: B:R.42, B:R.72 SO4.7: 4 residues within 4Å: Chain A: T.206 Chain B: R.74, P.95, S.133 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.133 Water bridges: B:R.74, A:T.206, A:T.206 Salt bridges: B:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keusekotten, K. et al., Otulin Antagonizes Lubac Signaling by Specifically Hydrolyzing met1-Linked Polyubiquitin. Cell(Cambridge,Mass.) (2013)

Release Date

2013-06-26

Peptides

PROTEIN FAM105B: A
POLYUBIQUITIN-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEIN FAM105B

POLYUBIQUITIN-C

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