SMTL ID : 3bcc.1

STIGMATELLIN AND ANTIMYCIN BOUND CYTOCHROME BC1 COMPLEX FROM CHICKEN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-mer

Ligands

6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.1: 22 residues within 4Å: Chain C: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, V.67, R.81, H.84, A.85, A.88, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, H.183, F.184, P.187 22 PLIP interactions: 22 interactions with chain C, Hydrophobic interactions: C:Q.45, C:I.46, C:L.52, C:L.52, C:A.53, C:Y.56, C:Y.56, C:V.67, C:A.88, C:L.124, C:A.128, C:Y.132, C:L.134, C:F.184, C:P.187 Salt bridges: C:R.81, C:R.81 pi-Stacking: C:H.84, C:H.84, C:H.183 Metal complexes: C:H.84, C:H.183 HEM.2: 25 residues within 4Å: Chain C: W.32, N.33, F.34, G.35, S.36, L.38, A.39, I.95, H.98, I.99, R.101, S.107, Y.110, T.113, W.114, G.117, V.118, L.120, L.121, T.194, H.197, L.198, L.201, N.207 Ligands: AMY.4 22 PLIP interactions: 22 interactions with chain C, Hydrophobic interactions: C:L.38, C:I.95, C:I.99, C:Y.110, C:W.114, C:W.114, C:L.120, C:L.121, C:T.194, C:L.198, C:L.201, C:L.201 Hydrogen bonds: C:W.32, C:S.107, C:N.207 Salt bridges: C:H.98, C:R.101, C:R.101 pi-Stacking: C:H.98, C:H.197 Metal complexes: C:H.98, C:H.197 HEM.5: 24 residues within 4Å: Chain D: V.32, V.36, C.37, S.39, C.40, H.41, N.105, A.108, P.110, P.111, L.113, I.116, R.120, Y.126, V.127, L.130, L.131, F.153, I.158, G.159, M.160, P.163, V.186, L.190 19 PLIP interactions: 19 interactions with chain D, Hydrophobic interactions: D:V.32, D:V.36, D:N.105, D:A.108, D:P.110, D:L.113, D:I.116, D:V.127, D:L.130, D:L.131, D:I.158, D:M.160, D:P.163, D:L.190 Hydrogen bonds: D:Y.126, D:G.159 Salt bridges: D:R.120 pi-Stacking: D:H.41 Metal complexes: D:H.41 HEM.7: 22 residues within 4Å: Chain M: Q.45, I.46, G.49, L.50, L.52, A.53, Y.56, V.67, R.81, H.84, A.85, A.88, L.124, T.127, A.128, G.131, Y.132, L.134, P.135, H.183, F.184, P.187 22 PLIP interactions: 22 interactions with chain M, Hydrophobic interactions: M:Q.45, M:I.46, M:L.52, M:L.52, M:A.53, M:Y.56, M:Y.56, M:V.67, M:A.88, M:L.124, M:A.128, M:Y.132, M:L.134, M:F.184, M:P.187 Salt bridges: M:R.81, M:R.81 pi-Stacking: M:H.84, M:H.84, M:H.183 Metal complexes: M:H.84, M:H.183 HEM.8: 25 residues within 4Å: Chain M: W.32, N.33, F.34, G.35, S.36, L.38, A.39, I.95, H.98, I.99, R.101, S.107, Y.110, T.113, W.114, G.117, V.118, L.120, L.121, T.194, H.197, L.198, L.201, N.207 Ligands: AMY.10 22 PLIP interactions: 22 interactions with chain M, Hydrophobic interactions: M:L.38, M:I.95, M:I.99, M:Y.110, M:W.114, M:W.114, M:L.120, M:L.121, M:T.194, M:L.198, M:L.201, M:L.201 Hydrogen bonds: M:W.32, M:S.107, M:N.207 Salt bridges: M:H.98, M:R.101, M:R.101 pi-Stacking: M:H.98, M:H.197 Metal complexes: M:H.98, M:H.197 HEM.11: 24 residues within 4Å: Chain N: V.32, V.36, C.37, S.39, C.40, H.41, N.105, A.108, P.110, P.111, L.113, I.116, R.120, Y.126, V.127, L.130, L.131, F.153, I.158, G.159, M.160, P.163, V.186, L.190 20 PLIP interactions: 20 interactions with chain N, Hydrophobic interactions: N:V.32, N:V.36, N:N.105, N:A.108, N:P.110, N:L.113, N:I.116, N:V.127, N:L.130, N:L.131, N:I.158, N:M.160, N:P.163, N:L.190 Hydrogen bonds: N:Y.126, N:Y.126, N:G.159 Salt bridges: N:R.120 pi-Stacking: N:H.41 Metal complexes: N:H.41

2 x SIG: STIGMATELLIN(Non-covalent)

SIG.3: 15 residues within 4Å: Chain C: M.125, F.129, V.130, G.143, V.146, I.147, F.151, L.182, I.269, P.271, F.275, Y.279, L.295 Chain O: C.160, H.161 12 PLIP interactions: 11 interactions with chain C, 1 interactions with chain O Hydrophobic interactions: C:M.125, C:F.129, C:V.130, C:V.146, C:I.147, C:F.151, C:L.182, C:P.271, C:F.275, C:F.275, C:L.295 Hydrogen bonds: O:H.161 SIG.9: 15 residues within 4Å: Chain E: C.160, H.161 Chain M: M.125, F.129, V.130, G.143, V.146, I.147, F.151, L.182, I.269, P.271, F.275, Y.279, L.295 12 PLIP interactions: 1 interactions with chain E, 11 interactions with chain M Hydrogen bonds: E:H.161 Hydrophobic interactions: M:M.125, M:F.129, M:V.130, M:V.146, M:I.147, M:F.151, M:L.182, M:P.271, M:F.275, M:F.275, M:L.295

2 x AMY: ANTIMYCIN(Non-covalent)

AMY.4: 19 residues within 4Å: Chain C: S.18, I.28, W.32, N.33, G.35, S.36, A.39, L.42, M.43, A.191, T.194, I.195, L.198, S.206, F.221, Y.225, K.228, D.229 Ligands: HEM.2 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.42, C:T.194, C:L.198 Hydrogen bonds: C:D.229, C:D.229 pi-Stacking: C:F.221 AMY.10: 19 residues within 4Å: Chain M: S.18, I.28, W.32, N.33, G.35, S.36, A.39, L.42, M.43, A.191, T.194, I.195, L.198, S.206, F.221, Y.225, K.228, D.229 Ligands: HEM.8 6 PLIP interactions: 6 interactions with chain M Hydrophobic interactions: M:L.42, M:T.194, M:L.198 Hydrogen bonds: M:D.229, M:D.229 pi-Stacking: M:F.221

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.6: 9 residues within 4Å: Chain E: C.139, H.141, L.142, C.144, C.158, C.160, H.161, G.162, S.163 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.139, E:H.141, E:C.158, E:H.161 FES.12: 9 residues within 4Å: Chain O: C.139, H.141, L.142, C.144, C.158, C.160, H.161, G.162, S.163 4 PLIP interactions: 4 interactions with chain O, Metal complexes: O:C.139, O:H.141, O:C.158, O:H.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Electron transfer by domain movement in cytochrome bc1. Nature (1998)

Release Date

1998-08-19

Peptides

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: AK
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: BL
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: CM
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: DN
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: EO
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: FP
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: GQ
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: HR
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: IS
UBIQUINOL CYTOCHROME C OXIDOREDUCTASE: JT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

K
A

B
B

L
B

C
C

M
C

D
D

N
D

E
E

O
E

F
F

P
F

G
G

Q
G

H
H

R
H

I
I

S
I

J
J

T
J

Membrane

We predict this structure to be a membrane protein.
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UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

UBIQUINOL CYTOCHROME C OXIDOREDUCTASE

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