SMTL ID : 3c5j.2 (1 other biounit)

Crystal structure of HLA DR52c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-2-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: V.116, N.118, E.166, H.167, W.168 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.116, A:W.168 Hydrogen bonds: A:N.118, A:W.168 Water bridges: A:H.167 NAG.2: 2 residues within 4Å: Chain B: N.19, E.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.19, B:E.22 NAG.4: 5 residues within 4Å: Chain D: V.116, N.118, E.166, H.167, W.168 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.116, D:W.168 Hydrogen bonds: D:N.118, D:W.168 Water bridges: D:H.167 NAG.5: 2 residues within 4Å: Chain E: N.19, E.22 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.19, E:E.22

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: W.168 Chain B: R.4, R.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.4 Salt bridges: B:R.4, B:R.6 SO4.6: 3 residues within 4Å: Chain D: W.168 Chain E: R.4, R.6 2 PLIP interactions: 2 interactions with chain E Salt bridges: E:R.4, E:R.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, S. et al., The structure of HLA-DR52c: comparison to other HLA-DRB3 alleles. Proc.Natl.Acad.Sci.USA (2008)

Release Date

2008-08-05

Peptides

HLA class II histocompatibility antigen, DR alpha chain: AD
MHC class II antigen: BE
Elongation factor 1-alpha 2: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
B

E
B

C
C

F
C

HLA class II histocompatibility antigen, DR alpha chain

MHC class II antigen

Elongation factor 1-alpha 2

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