SMTL ID : 3ckn.1

Crystal Structure of a Mycobacterial Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.141, H.263 Ligands: UDP.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.141, A:D.141, A:H.263, H2O.2, H2O.2 MN.4: 3 residues within 4Å: Chain B: D.141, H.263 Ligands: UDP.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.141, B:D.141, B:H.263, H2O.3, H2O.3

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.116, A:R.320 SO4.5: 3 residues within 4Å: Chain B: P.114, R.116, R.320 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.116, B:R.320

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 15 residues within 4Å: Chain A: P.55, A.56, L.57, E.59, S.86, G.118, K.119, D.139, S.140, D.141, Y.234, H.263, R.266, M.274 Ligands: MN.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:L.57, A:L.57, A:S.86, A:S.86, A:G.118, A:S.140, A:S.140, A:D.141 Water bridges: A:R.261, A:H.263, A:H.263 Salt bridges: A:H.263, A:R.266 UDP.6: 15 residues within 4Å: Chain B: P.55, A.56, L.57, E.59, S.86, G.118, K.119, D.139, S.140, D.141, Y.234, H.263, R.266, M.274 Ligands: MN.4 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:L.57, B:L.57, B:S.86, B:S.86, B:G.118, B:S.140, B:S.140, B:D.141, B:Y.234 Water bridges: B:D.139 Salt bridges: B:H.263, B:R.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulton, Z. et al., Crystal structure of a UDP-glucose-specific glycosyltransferase from a Mycobacterium species. J.Biol.Chem. (2008)

Release Date

2008-07-29

Peptides

Putative uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative uncharacterized protein

Related Entries With Identical Sequence