SMTL ID : 3cs8.1

Structural and Biochemical Basis for the Binding Selectivity of PPARg to PGC-1a

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.33, M.133, N.134, K.135, V.171, N.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.135, A:N.174 Salt bridges: A:R.33 SO4.2: 5 residues within 4Å: Chain A: E.168, F.169, K.172, D.240, I.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.168 Salt bridges: A:K.172 SO4.3: 5 residues within 4Å: Chain A: K.29, A.30, R.33, L.178, D.179 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.29 SO4.5: 3 residues within 4Å: Chain B: S.2, K.5, L.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.2

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.4: 15 residues within 4Å: Chain A: I.80, G.83, C.84, Q.85, S.88, H.122, I.125, L.129, I.140, M.163, K.166, H.248, L.252, L.268, Y.272 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.125, A:L.129, A:K.166 Hydrogen bonds: A:S.88, A:Y.272, A:Y.272

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Structural and biochemical basis for the binding selectivity of peroxisome proliferator-activated receptor gamma to PGC-1alpha. J.Biol.Chem. (2008)

Release Date

2008-06-03

Peptides

Peroxisome proliferator-activated receptor gamma: A
PGC-1alfa peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

PGC-1alfa peptide

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