SMTL ID : 3cu7.3 (2 other biounits)

Human Complement Component 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.11 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.909, N.911, I.922 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: N.909, N.911, I.922, V.924 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.741 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain B: N.741 No protein-ligand interaction detected (PLIP)

9 x CD: CADMIUM ION(Non-covalent)

CD.4: 2 residues within 4Å: Chain A: E.247 Chain B: E.247 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.247, A:E.247, B:E.247, B:E.247 CD.5: 3 residues within 4Å: Chain A: D.471, H.473, E.480 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.471, A:D.471, A:H.473, A:E.480, A:E.480 CD.6: 2 residues within 4Å: Chain A: D.264, H.753 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.264, A:H.753 CD.7: 2 residues within 4Å: Chain A: E.339, E.764 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.339, A:E.764, A:E.764 CD.8: 4 residues within 4Å: Chain A: Q.886, H.894, A.1558, E.1589 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.894, A:E.1589, A:E.1589 CD.10: 3 residues within 4Å: Chain B: D.471, H.473, E.480 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.471, B:D.471, B:H.473, B:E.480, B:E.480 CD.11: 2 residues within 4Å: Chain B: D.264, H.753 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.264, B:H.753 CD.12: 2 residues within 4Å: Chain B: E.339, E.764 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.339, B:E.764, B:E.764 CD.13: 3 residues within 4Å: Chain A: E.1666 Chain B: Q.886, H.894 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:H.894, A:E.1666, A:E.1666

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fredslund, F. et al., Structure of and influence of a tick complement inhibitor on human complement component 5. Nat.Immunol. (2008)

Release Date

2008-06-10

Peptides

Complement C5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Complement C5

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