SMTL ID : 3d3e.2 (1 other biounit)

Crystal Structure of Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) in Complex with Benzamide Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 28 residues within 4Å: Chain A: G.35, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, T.116, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: D3E.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.209, A:I.212 Hydrogen bonds: A:G.35, A:S.37, A:S.37, A:K.38, A:I.40, A:R.60, A:S.61, A:T.86, A:M.87, A:N.113, A:N.113, A:I.115, A:K.181, A:I.212, A:I.212, A:T.214, A:T.216, A:T.216 Salt bridges: A:K.38, A:R.60 pi-Cation interactions: A:R.60 NAP.3: 27 residues within 4Å: Chain B: G.35, A.36, S.37, K.38, G.39, I.40, G.41, A.59, R.60, S.61, T.86, M.87, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, I.212, T.214, T.216, A.217 Ligands: D3E.4 27 PLIP interactions: 27 interactions with chain B Hydrophobic interactions: B:L.209, B:I.212 Hydrogen bonds: B:S.37, B:S.37, B:K.38, B:K.38, B:I.40, B:G.41, B:R.60, B:S.61, B:T.86, B:T.86, B:M.87, B:N.113, B:I.115, B:Y.177, B:K.181, B:I.212, B:T.214, B:T.214, B:T.214, B:T.216, B:T.216 Water bridges: B:T.116, B:T.116 Salt bridges: B:K.38, B:R.60

2 x D3E: N-cyclopropyl-N-(trans-4-pyridin-3-ylcyclohexyl)-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide(Non-covalent)

D3E.2: 16 residues within 4Å: Chain A: T.118, S.119, L.120, S.164, L.165, Y.171, P.172, M.173, Y.177, L.209, G.210, L.211, T.216, A.217, A.220 Ligands: NAP.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.120, A:L.165, A:Y.171, A:M.173, A:Y.177 Hydrogen bonds: A:Y.177, A:T.216 Halogen bonds: A:T.118 D3E.4: 16 residues within 4Å: Chain B: T.118, S.119, L.120, S.164, L.165, Y.171, M.173, V.174, Y.177, L.209, G.210, L.211, T.216, A.217, A.220 Ligands: NAP.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.120, B:L.165, B:Y.171, B:Y.171, B:V.174, B:Y.177, B:Y.177 Hydrogen bonds: B:S.164, B:T.216 Halogen bonds: B:T.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Julian, L.D. et al., Discovery of Novel, Potent Benzamide Inhibitors of 11beta-Hydroxysteroid Dehydrogenase Type 1 (11beta-HSD1) Exhibiting Oral Activity in an Enzyme Inhibition ex Vivo Model. J.Med.Chem. (2008)

Release Date

2008-07-01

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Corticosteroid 11-beta-dehydrogenase isozyme 1

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