SMTL ID : 3frj.2 (1 other biounit)

Crystal Structure of 11b-Hydroxysteroid Dehydrogenase-1 (11b-HSD1) in Complex with Piperidyl Benzamide Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.209 Hydrogen bonds: A:S.37, A:S.37, A:K.38, A:K.38, A:I.40, A:R.60, A:S.61, A:T.86, A:T.86, A:M.87, A:N.113, A:N.113, A:I.115, A:Y.141, A:K.181, A:I.212, A:I.212, A:T.214, A:T.214, A:T.216 Water bridges: A:G.41 Salt bridges: A:K.38, A:R.60 NAP.3: 31 residues within 4Å: Chain B: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, E.88, N.113, H.114, I.115, N.117, Y.141, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: A49.2 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:L.209 Hydrogen bonds: B:G.35, B:S.37, B:S.37, B:K.38, B:I.40, B:R.60, B:S.61, B:T.86, B:T.86, B:M.87, B:N.113, B:N.113, B:I.115, B:Y.141, B:K.181, B:I.212, B:I.212, B:T.214, B:T.216 Water bridges: B:K.38, B:G.41, B:R.60, B:S.61, B:S.61, B:N.117, B:T.214 Salt bridges: B:K.38, B:R.60 pi-Cation interactions: B:H.114

1 x A49: N-{1-[(1-carbamoylcyclopropyl)methyl]piperidin-4-yl}-N-cyclopropyl-4-[(1S)-2,2,2-trifluoro-1-hydroxy-1-methylethyl]benzamide(Non-covalent)

A49.2: 21 residues within 4Å: Chain A: Y.274, S.277, Y.278 Chain B: T.118, S.119, L.120, S.164, Y.171, P.172, M.173, V.174, Y.177, L.209, G.210, L.211, T.216, A.217, A.220, V.225, M.227 Ligands: NAP.3 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:Y.274, A:S.277, B:S.164, B:Y.177 Hydrophobic interactions: B:Y.171, B:V.174, B:Y.177, B:V.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rew, Y. et al., Discovery and optimization of piperidyl benzamide derivatives as a novel class of 11beta-HSD1 inhibitors. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-06-16

Peptides

Corticosteroid 11-beta-Dehydrogenase, Isozyme 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Corticosteroid 11-beta-Dehydrogenase, Isozyme 1

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