SMTL ID : 3d5m.1 (1 other biounit)

Crystal structure of HCV NS5B polymerase with a novel pyridazinone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 4MS: N-({3-[(5S)-5-tert-butyl-1-(3-chloro-4-fluorobenzyl)-4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]-1,1-dioxido-1,2-benzis othiazol-7-yl}methyl)methanesulfonamide(Non-covalent)

4MS.1: 20 residues within 4Å: Chain A: F.193, P.197, R.200, S.288, N.291, N.316, G.317, D.318, D.319, C.366, S.368, L.384, N.411, M.414, Y.415, Q.446, I.447, Y.448, G.449, S.556 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:N.316, A:D.319, A:Y.415, A:Y.415, A:Y.448 Hydrogen bonds: A:N.291, A:D.318, A:D.318, A:Q.446, A:Y.448, A:G.449, A:S.556 Water bridges: A:S.556, A:S.556 pi-Stacking: A:F.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.H. et al., Structure-based design, synthesis, and biological evaluation of 1,1-dioxoisothiazole and benzo[b]thiophene-1,1-dioxide derivatives as novel inhibitors of hepatitis C virus NS5B polymerase. Bioorg.Med.Chem.Lett. (2008)

Release Date

2009-05-19

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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