SMTL ID : 3dm2.1

Crystal structure of HIV-1 K103N mutant reverse transcriptase in complex with GW564511.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: G.436, A.437, N.460, R.461 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.436, A:N.460 Salt bridges: A:R.461 PO4.3: 4 residues within 4Å: Chain B: R.356, R.358, G.359, H.361 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.359, B:H.361 Salt bridges: B:R.356

1 x GWE: N-{4-[amino(dihydroxy)-lambda~4~-sulfanyl]-2-methylphenyl}-2-(4-chloro-2-{[3-fluoro-5-(trifluoromethyl)phenyl]carbonyl}phenoxy)acetamide(Non-covalent)

GWE.2: 20 residues within 4Å: Chain A: P.95, L.100, K.101, K.102, N.103, K.104, S.105, V.106, V.179, Y.181, Y.188, V.189, G.190, P.225, F.227, W.229, L.234, H.235, P.236, Y.318 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.100, A:V.106, A:V.106, A:V.106, A:Y.188, A:Y.188, A:Y.188, A:W.229, A:L.234, A:L.234, A:P.236 Hydrogen bonds: A:N.103, A:V.106, A:V.106, A:Y.318 pi-Stacking: A:Y.181 Halogen bonds: A:V.179, A:Y.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, J. et al., Structural basis for the improved drug resistance profile of new generation benzophenone non-nucleoside HIV-1 reverse transcriptase inhibitors. J.Med.Chem. (2008)

Release Date

2008-08-12

Peptides

Reverse transcriptase/ribonuclease H: A
p51 RT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reverse transcriptase/ribonuclease H

p51 RT

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