SMTL ID : 3e00.1

Intact PPAR gamma - RXR alpha Nuclear Receptor Complex on DNA bound with GW9662, 9-cis Retinoic Acid and NCOA2 Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-2-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.140, C.143, C.157, C.160, R.189 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:C.157, A:C.160 ZN.2: 4 residues within 4Å: Chain A: C.176, C.182, C.192, C.195 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.176, A:C.182, A:C.192, A:C.195 ZN.4: 4 residues within 4Å: Chain B: C.53, C.56, C.70, C.73 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.53, B:C.56, B:C.70, B:C.73 ZN.5: 5 residues within 4Å: Chain B: C.90, L.92, C.94, C.104, C.107 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.90, B:C.94, B:C.104, B:C.107

1 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.3: 13 residues within 4Å: Chain A: I.273, A.276, A.277, Q.280, W.310, N.311, F.318, R.321, A.332, V.347, I.350, C.437, H.440 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.273, A:A.276, A:A.277, A:W.310, A:N.311, A:F.318, A:F.318, A:F.318, A:V.347, A:I.350, A:H.440 Hydrogen bonds: A:A.276, A:A.332 Salt bridges: A:R.321

1 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Non-covalent)

GW9.6: 6 residues within 4Å: Chain B: F.224, C.227, S.231, L.272, H.391, Y.415 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.272, B:Y.415 pi-Stacking: B:H.391

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chandra, V. et al., Structure of the intact PPAR-gamma-RXR- nuclear receptor complex on DNA. Nature (2008)

Release Date

2008-10-28

Peptides

Retinoic acid receptor RXR-alpha: A
Peroxisome proliferator-activated receptor gamma: B
NCOA2 Peptide: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

E
G

F
E

Retinoic acid receptor RXR-alpha

Peroxisome proliferator-activated receptor gamma

NCOA2 Peptide

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