SMTL ID : 7kco.1

ROR gamma in complex with SCR2 and compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-2-2-mer

Ligands

2 x WB7: 1-[(2-chlorophenyl)methyl]-N-{[4-(methylsulfonyl)phenyl]methyl}-4',5'-dihydrospiro[piperidine-4,7'-thieno[2,3-c]pyran]-2'-carboxamide(Non-covalent)

WB7.1: 20 residues within 4Å: Chain A: C.26, Q.27, L.28, L.33, W.58, C.61, H.64, L.65, R.105, M.106, R.108, A.109, V.117, F.118, F.119, L.132, C.134, L.137, H.220, Y.243 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.27, A:L.28, A:L.28, A:W.58, A:W.58, A:A.109, A:V.117, A:F.118, A:L.132, A:L.137 Hydrogen bonds: A:F.118 Water bridges: A:Q.27, A:E.120 pi-Stacking: A:F.119 WB7.2: 22 residues within 4Å: Chain B: C.26, Q.27, L.28, L.33, W.58, C.61, A.62, H.64, L.65, M.99, R.105, M.106, R.108, A.109, V.117, F.118, F.119, L.132, C.134, L.137, H.220, Y.243 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.28, B:W.58, B:W.58, B:A.109, B:V.117, B:L.132, B:L.137 Hydrogen bonds: B:F.118 Water bridges: B:Q.27, B:E.120 pi-Stacking: B:F.119

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: C.107, R.108, L.148, S.149, H.152, F.153, I.158 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.148, B:F.153 Water bridges: B:C.107, B:S.149, B:F.153, B:E.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lugar, C.W. et al., Defining Target Engagement Required for Efficacy In Vivo at the Retinoic Acid Receptor-Related Orphan Receptor C2 (ROR gamma t). J.Med.Chem. (2021)

Release Date

2021-04-21

Peptides

Nuclear receptor ROR-gamma: AB
Peptide GLU-LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Nuclear receptor ROR-gamma

Peptide GLU-LYS-HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP-SER

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