SMTL ID : 3elu.1

Wesselsbron virus Methyltransferase in complex with AdoMet

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: S.64, G.66, A.67, G.89, C.90, G.91, G.93, G.94, W.95, T.112, L.113, H.118, S.138, N.139, V.140, F.141, D.154, I.155 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:S.64, A:C.90, A:G.93, A:G.94, A:W.95, A:T.112, A:L.113, A:H.118, A:N.139, A:V.140 Water bridges: A:D.87, A:D.87, A:G.89, A:E.119, A:E.119 Salt bridges: A:D.154

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: E.177, K.180, H.181, V.182, F.210 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.180 SO4.3: 2 residues within 4Å: Chain A: K.29, Q.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.29, A:Q.30 SO4.4: 5 residues within 4Å: Chain A: E.177, K.202, R.205, L.206, R.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.177 Water bridges: A:K.202, A:R.205 Salt bridges: A:K.202, A:R.209 SO4.5: 5 residues within 4Å: Chain A: R.45, R.49, S.64, R.65, R.92 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.65 Water bridges: A:R.49, A:R.49 Salt bridges: A:R.45, A:R.49, A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bollati, M. et al., Recognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus. J.Mol.Biol. (2009)

Release Date

2008-11-18

Peptides

Methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyltransferase

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