SMTL ID : 3emd.1

Wesselsbron virus Methyltransferase in complex with Sinefungin and 7MeGpppA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 19 residues within 4Å: Chain A: S.64, G.66, A.67, G.89, C.90, G.91, G.93, G.94, W.95, T.112, L.113, E.119, S.138, N.139, V.140, F.141, D.154, I.155 Ligands: SO4.5 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.64, A:C.90, A:G.93, A:G.94, A:W.95, A:W.95, A:T.112, A:L.113, A:E.119, A:E.119, A:N.139, A:V.140, A:D.154 Water bridges: A:G.66, A:R.92, A:S.96, A:G.114, A:Y.228

1 x GTA: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE(Non-covalent)

GTA.2: 10 residues within 4Å: Chain A: K.21, L.24, N.25, L.27, K.29, F.32, S.158, S.159, S.160, S.223 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:K.21, A:N.25, A:N.25, A:L.27, A:L.27, A:K.29, A:S.158, A:S.223 Water bridges: A:S.158 pi-Stacking: A:F.32, A:F.32

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: R.45, R.49, S.64, R.65, R.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.65 Salt bridges: A:R.45, A:R.49, A:R.92 SO4.4: 3 residues within 4Å: Chain A: H.239, N.242, R.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.242 Water bridges: A:R.246 Salt bridges: A:H.239, A:R.246 SO4.5: 3 residues within 4Å: Chain A: G.66, K.69 Ligands: SFG.1 8 PLIP interactions: 8 interactions with chain A Water bridges: A:G.66, A:K.69, A:K.69, A:K.69, A:D.154, A:D.154, A:K.190 Salt bridges: A:K.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bollati, M. et al., Recognition of RNA Cap in the Wesselsbron Virus NS5 Methyltransferase Domain: Implications for RNA-Capping Mechanisms in Flavivirus. J.Mol.Biol. (2009)

Release Date

2008-11-18

Peptides

methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

methyltransferase

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