SMTL ID : 3f5x.4 (3 other biounits)

CDK-2-Cyclin complex with indazole inhibitor 9 bound at its active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: F.4, N.23, E.28, L.67, D.68 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.23, A:E.28, A:D.68, A:D.68 Water bridges: A:T.26, A:E.28

1 x EZV: 4-{3-[7-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-indazol-6-yl}aniline(Non-covalent)

EZV.2: 18 residues within 4Å: Chain A: I.10, A.31, K.33, E.51, L.55, V.64, F.80, E.81, F.82, L.83, H.84, D.86, K.89, Q.131, L.134, A.144, D.145, F.146 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.31, A:L.55, A:V.64, A:F.80, A:F.82, A:L.134, A:A.144 Hydrogen bonds: A:E.51, A:E.51, A:E.81, A:L.83, A:K.89, A:D.145, A:F.146 Salt bridges: A:D.86 pi-Stacking: A:F.80

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: R.234, K.238, L.247 3 PLIP interactions: 3 interactions with chain B Water bridges: B:E.235 Salt bridges: B:R.234, B:K.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Trujillo, J.I. et al., 2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: Design and synthesis of a potent and isoform selective PKC-zeta inhibitor. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-02-03

Peptides

Cell division protein kinase 2: A
Cyclin-A2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Cell division protein kinase 2

Cyclin-A2

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