SMTL ID : 7rwe.1

Crystal structure of CDK2 liganded with compound GPHR787

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

2 x 7TH: 5-nitro-2-[(3-phenylpropyl)amino]benzoic acid(Non-covalent)

7TH.1: 15 residues within 4Å: Chain A: I.10, V.18, A.31, K.33, V.64, F.80, E.81, F.82, L.83, H.84, Q.85, D.86, K.89, L.134, D.145 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.10, A:A.31, A:L.134 Hydrogen bonds: A:L.83, A:L.83 7TH.2: 14 residues within 4Å: Chain A: K.33, I.35, I.52, L.55, L.58, I.63, V.64, L.78, F.80, C.118, V.123, D.145, F.146, L.148 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.55, A:L.58, A:I.63, A:L.78, A:F.80, A:V.123, A:F.146, A:F.146, A:F.146, A:F.146, A:L.148, A:L.148 Hydrogen bonds: A:D.145, A:F.146 Salt bridges: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faber, E.B. et al., Screening through Lead Optimization of High Affinity, Allosteric Cyclin-Dependent Kinase 2 (CDK2) Inhibitors as Male Contraceptives That Reduce Sperm Counts in Mice. J.Med.Chem. (2023)

Release Date

2022-08-24

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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