SMTL ID : 3f73.1 (1 other biounit)

Alignment of guide-target seed duplex within an argonaute silencing complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.478, D.546, R.548, D.660 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.478, A:D.546, A:D.660, A:D.660 MG.2: 5 residues within 4Å: Chain A: Q.433, V.685 Chain B: T.1, G.2, A.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:V.685

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, Y. et al., Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature (2008)

Release Date

2008-12-16

Peptides

ARGONAUTE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ARGONAUTE

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