SMTL ID : 4n41.2 (1 other biounit)

Structure of Thermus thermophilus Argonaute bound to guide DNA and 15-mer target DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.478, A.479, D.660 Chain C: T.5 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.478, A:D.478, A:D.660, H2O.1 MG.2: 3 residues within 4Å: Chain A: V.685 Chain B: T.1, A.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.685, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sheng, G. et al., Structure-based cleavage mechanism of Thermus thermophilus Argonaute DNA guide strand-mediated DNA target cleavage. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-01-15

Peptides

Argonaute: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Argonaute

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