SMTL ID : 3f9k.11 (15 other biounits)

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-2-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.13, A:H.17, A:C.41, A:C.44 ZN.3: 4 residues within 4Å: Chain B: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.13, B:H.17, B:C.41, B:C.44

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.65, C.66, D.117 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.65, A:D.117 MG.4: 2 residues within 4Å: Chain B: D.65, D.117 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.65, B:D.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hare, S. et al., A novel co-crystal structure affords the design of gain-of-function lentiviral integrase mutants in the presence of modified PSIP1/LEDGF/p75. Plos Pathog. (2009)

Release Date

2009-01-20

Peptides

Integrase: AB
PC4 and SFRS1-interacting protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
o

B
p

C
q

Integrase

PC4 and SFRS1-interacting protein

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