SMTL ID : 3f9k.13 (15 other biounits)

Two domain fragment of HIV-2 integrase in complex with LEDGF IBD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-6-3-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.13, A:H.17, A:C.41, A:C.44 ZN.3: 4 residues within 4Å: Chain B: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.13, B:H.17, B:C.41, B:C.44 ZN.5: 4 residues within 4Å: Chain D: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:H.13, D:H.17, D:C.41, D:C.44 ZN.7: 4 residues within 4Å: Chain E: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.13, E:H.17, E:C.41, E:C.44 ZN.9: 4 residues within 4Å: Chain G: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:H.13, G:H.17, G:C.41, G:C.44 ZN.11: 4 residues within 4Å: Chain H: H.13, H.17, C.41, C.44 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:H.13, H:H.17, H:C.41, H:C.44

6 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.65, C.66, D.117 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.65, A:D.117 MG.4: 3 residues within 4Å: Chain B: D.65, C.66, D.117 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.65, B:D.117 MG.6: 2 residues within 4Å: Chain D: D.65, D.117 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.65, D:D.117 MG.8: 2 residues within 4Å: Chain E: D.65, D.117 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.65, E:D.117 MG.10: 2 residues within 4Å: Chain G: D.65, D.117 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.65, G:D.117 MG.12: 3 residues within 4Å: Chain H: D.65, C.66, D.117 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:D.65, H:D.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hare, S. et al., A novel co-crystal structure affords the design of gain-of-function lentiviral integrase mutants in the presence of modified PSIP1/LEDGF/p75. Plos Pathog. (2009)

Release Date

2009-01-20

Peptides

Integrase: ABDEGH
PC4 and SFRS1-interacting protein: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

D
U

E
V

G
g

H
h

C
G

F
W

I
i

Integrase

PC4 and SFRS1-interacting protein

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