SMTL ID : 3fg5.1

Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x PHE- LEU- SER- TYR- LYS: pentapeptide FLSYK(Non-covalent)

PHE-LEU-SER-TYR-LYS.1: 16 residues within 4Å: Chain A: L.2, L.3, F.5, G.6, L.16, A.17, I.18, Y.21, S.22, Y.27, C.28, G.29, W.30, C.44, D.48, K.60 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.2, A:L.16 Hydrogen bonds: A:I.18, A:G.29, A:C.44, A:H.47, A:K.60 Water bridges: A:A.17

1 x AJM: AJMALINE(Non-covalent)

AJM.2: 5 residues within 4Å: Chain A: G.32, D.48, Y.51, G.52, L.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.32, A:D.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, M. et al., Crystal structure determination of a ternary complex of phospholipase A2 with a pentapeptide FLSYK and Ajmaline at 2.5 A resolution. To be Published

Release Date

2008-12-23

Peptides

Group II Phospholipase A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Group II Phospholipase A2

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