SMTL ID : 3fks.2 (2 other biounits)

Yeast F1 ATPase in the absence of bound nucleotides

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

hetero-3-3-1-1-1-mer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: D.172, Q.174, T.175, G.176, K.177, T.178 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.174, A:T.175, A:T.175, A:T.175, A:G.176, A:K.177, A:T.178, A:T.178 Salt bridges: A:K.177 PO4.2: 7 residues within 4Å: Chain B: D.172, Q.174, T.175, G.176, K.177, T.178, A.179 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:Q.174, B:T.175, B:T.175, B:G.176, B:K.177, B:T.178, B:T.178, B:T.178, B:A.179 Salt bridges: B:K.177 PO4.3: 7 residues within 4Å: Chain C: D.172, R.173, Q.174, T.175, G.176, K.177, T.178 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Q.174, C:Q.174, C:T.175, C:G.176, C:K.177, C:T.178, C:T.178 Salt bridges: C:K.177 PO4.4: 8 residues within 4Å: Chain C: R.375 Chain D: G.164, G.166, V.167, G.168, K.169, T.170, R.196 9 PLIP interactions: 1 interactions with chain C, 8 interactions with chain D Salt bridges: C:R.375, D:K.169, D:R.196 Hydrogen bonds: D:G.166, D:V.167, D:G.168, D:K.169, D:T.170, D:T.170 PO4.5: 6 residues within 4Å: Chain A: R.375 Chain E: K.169, R.196, D.262, N.263, R.266 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:D.262, E:N.263 Salt bridges: E:K.169, E:R.196, E:R.266, A:R.375 PO4.6: 9 residues within 4Å: Chain B: R.375 Chain F: G.164, A.165, G.166, V.167, G.168, K.169, T.170, R.196 11 PLIP interactions: 10 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:G.164, F:G.166, F:V.167, F:G.168, F:K.169, F:T.170, F:T.170, F:T.170 Salt bridges: F:K.169, F:R.196, B:R.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kabaleeswaran, V. et al., Asymmetric structure of the yeast f1 ATPase in the absence of bound nucleotides. J.Biol.Chem. (2009)

Release Date

2009-03-03

Peptides

ATP synthase subunit alpha, mitochondrial: ABC
ATP synthase subunit beta, mitochondrial: DEF
ATP synthase subunit gamma, mitochondrial: G
ATP synthase subunit delta, mitochondrial: H
ATP synthase subunit epsilon, mitochondrial: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
K

C
L

D
M

E
N

F
O

G
P

H
Q

I
R

ATP synthase subunit alpha, mitochondrial

ATP synthase subunit beta, mitochondrial

ATP synthase subunit gamma, mitochondrial

ATP synthase subunit delta, mitochondrial

ATP synthase subunit epsilon, mitochondrial

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