SMTL ID : 3fks.3 (2 other biounits)

Yeast F1 ATPase in the absence of bound nucleotides

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.59 Å

Oligo State

hetero-3-3-1-1-1-mer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: D.172, R.173, Q.174, T.175, G.176, K.177, T.178 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.174, A:T.175, A:T.175, A:G.176, A:K.177, A:T.178, A:T.178 Salt bridges: A:K.177 PO4.2: 7 residues within 4Å: Chain B: D.172, R.173, Q.174, T.175, G.176, K.177, T.178 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.174, B:T.175, B:G.176, B:K.177, B:T.178, B:T.178, B:A.179 Salt bridges: B:K.177 PO4.3: 7 residues within 4Å: Chain C: D.172, R.173, Q.174, T.175, G.176, K.177, T.178 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Q.174, C:T.175, C:G.176, C:K.177, C:T.178, C:T.178 Salt bridges: C:K.177 PO4.4: 9 residues within 4Å: Chain B: R.375 Chain F: G.164, A.165, G.166, V.167, G.168, K.169, T.170, R.196 9 PLIP interactions: 8 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:G.166, F:V.167, F:G.168, F:K.169, F:T.170, F:T.170 Salt bridges: F:K.169, F:R.196, B:R.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kabaleeswaran, V. et al., Asymmetric structure of the yeast f1 ATPase in the absence of bound nucleotides. J.Biol.Chem. (2009)

Release Date

2009-03-03

Peptides

ATP synthase subunit alpha, mitochondrial: ABC
ATP synthase subunit beta, mitochondrial: DEF
ATP synthase subunit gamma, mitochondrial: G
ATP synthase subunit delta, mitochondrial: H
ATP synthase subunit epsilon, mitochondrial: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
T

C
U

D
V

E
W

F
X

G
Y

H
Z

I
1

ATP synthase subunit alpha, mitochondrial

ATP synthase subunit beta, mitochondrial

ATP synthase subunit gamma, mitochondrial

ATP synthase subunit delta, mitochondrial

ATP synthase subunit epsilon, mitochondrial

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