- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-3-3-1-1-1-1-mer
- Ligands
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: T.178, D.271
- Ligands: ATP.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:T.178, H2O.1, H2O.1, H2O.1
MG.4: 3 residues within 4Å:- Chain B: T.178, D.271
- Ligands: ADP.3
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:T.178, H2O.3, H2O.3, H2O.3, H2O.5
MG.6: 3 residues within 4Å:- Chain C: T.178, D.271
- Ligands: ADP.5
5 PLIP interactions:1 interactions with chain C, 4 Ligand-Water interactions- Metal complexes: C:T.178, H2O.6, H2O.6, H2O.6, H2O.8
MG.9: 2 residues within 4Å:- Chain D: T.164
- Ligands: ADP.8
5 PLIP interactions:1 interactions with chain D, 4 Ligand-Water interactions- Metal complexes: D:T.164, H2O.8, H2O.9, H2O.9, H2O.9
MG.12: 4 residues within 4Å:- Chain F: T.164, E.189, R.190
- Ligands: ADP.11
5 PLIP interactions:1 interactions with chain F, 4 Ligand-Water interactions- Metal complexes: F:T.164, H2O.12, H2O.12, H2O.12, H2O.12
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.3: 14 residues within 4Å:- Chain B: D.172, Q.174, T.175, G.176, K.177, T.178, A.179, F.359, R.364, Q.432, Q.434
- Chain E: R.356, D.359
- Ligands: MG.4
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:D.172, B:Q.174, B:T.175, B:T.175, B:G.176, B:K.177, B:T.178, B:A.179, B:R.364, B:Q.432, B:Q.434, B:Q.434
- Water bridges: B:K.177, B:K.177, B:T.178, B:T.178
- Salt bridges: B:K.177
ADP.5: 16 residues within 4Å:- Chain C: D.172, R.173, Q.174, T.175, G.176, K.177, T.178, A.179, F.359, R.364, P.365, Q.432, Q.434
- Chain F: R.356, Y.368
- Ligands: MG.6
14 PLIP interactions:13 interactions with chain C, 1 interactions with chain F- Hydrogen bonds: C:Q.174, C:T.175, C:T.175, C:G.176, C:K.177, C:T.178, C:A.179, C:R.364, C:Q.432, C:Q.434, F:R.356
- Water bridges: C:T.178, C:E.330
- Salt bridges: C:K.177
ADP.8: 13 residues within 4Å:- Chain C: R.375
- Chain D: G.158, G.160, V.161, G.162, K.163, T.164, V.165, Y.345, F.418, A.421, F.424
- Ligands: MG.9
18 PLIP interactions:13 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:G.158, D:G.160, D:V.161, D:G.162, D:K.163, D:T.164, D:V.165
- Water bridges: D:K.163, D:K.163, D:R.190, C:R.375, C:R.375, C:R.375
- Salt bridges: D:K.163, C:R.375, C:R.375
- pi-Stacking: D:Y.345, D:Y.345
ADP.10: 12 residues within 4Å:- Chain E: G.158, G.160, V.161, G.162, K.163, T.164, V.165, Y.345, F.418, A.421, F.424, T.425
13 PLIP interactions:13 interactions with chain E- Hydrogen bonds: E:G.160, E:V.161, E:G.162, E:K.163, E:T.164, E:T.164, E:T.164, E:V.165, E:Y.345
- Water bridges: E:K.163, E:T.164
- Salt bridges: E:K.163
- pi-Stacking: E:Y.345
ADP.11: 14 residues within 4Å:- Chain B: V.373, R.375
- Chain F: G.158, G.160, V.161, G.162, K.163, T.164, V.165, Y.345, F.418, A.421, F.424
- Ligands: MG.12
20 PLIP interactions:16 interactions with chain F, 4 interactions with chain B- Hydrogen bonds: F:G.160, F:V.161, F:G.162, F:K.163, F:T.164, F:V.165, B:R.375
- Water bridges: F:K.163, F:K.163, F:R.190, F:R.190, F:R.190, F:R.190, F:Y.345, B:R.375, B:R.375
- Salt bridges: F:K.163, B:R.375
- pi-Stacking: F:Y.345, F:Y.345
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robinson, G.C. et al., The Structure of F1-ATPase from Saccharomyces Cerevisiae Inhibited by its Regulatory Protein If1. Open Biol. (2013)
- Release Date
- 2013-02-13
- Peptides
- ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL: ABC
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL: DEF
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL: G
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL: H
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL: I
ATPASE INHIBITOR, MITOCHONDRIAL: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-3-3-1-1-1-1-mer
- Ligands
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Robinson, G.C. et al., The Structure of F1-ATPase from Saccharomyces Cerevisiae Inhibited by its Regulatory Protein If1. Open Biol. (2013)
- Release Date
- 2013-02-13
- Peptides
- ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL: ABC
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL: DEF
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL: G
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL: H
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL: I
ATPASE INHIBITOR, MITOCHONDRIAL: J - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
J