SMTL ID : 3ofn.3 (2 other biounits)

Structure of four mutant forms of yeast F1 ATPase: alpha-N67I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-3-3-1-mer

Ligands

5 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: R.173, Q.174, T.175, G.176, K.177, T.178, A.179, E.330, F.359, R.364, P.365, Q.432, Q.434 Chain D: Y.374 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.174, A:Q.174, A:Q.174, A:T.175, A:G.176, A:K.177, A:K.177, A:T.178, A:A.179, A:R.364, A:Q.432, A:Q.434 pi-Stacking: A:F.359 ANP.3: 15 residues within 4Å: Chain B: R.173, Q.174, T.175, G.176, K.177, T.178, A.179, E.330, F.359, R.364, Q.432, Q.434 Chain E: R.362, D.365 Ligands: MG.4 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain E Hydrogen bonds: B:Q.174, B:Q.174, B:T.175, B:T.175, B:G.176, B:K.177, B:K.177, B:T.178, B:A.179, B:R.364, B:Q.432, B:Q.434, E:R.362 ANP.5: 16 residues within 4Å: Chain C: D.172, R.173, Q.174, T.175, G.176, K.177, T.178, A.179, E.330, F.359, R.364, Q.432, Q.434 Chain F: S.361, Y.374 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:Q.174, C:Q.174, C:Q.174, C:T.175, C:T.175, C:G.176, C:K.177, C:K.177, C:T.178, C:T.178, C:A.179, C:Q.432, C:Q.434 ANP.7: 16 residues within 4Å: Chain C: S.374, R.375 Chain D: G.164, A.165, G.166, V.167, G.168, K.169, T.170, V.171, E.195, R.196, N.263, Y.317, Y.351 Ligands: MG.8 12 PLIP interactions: 11 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:G.166, D:V.167, D:G.168, D:K.169, D:K.169, D:T.170, D:V.171, D:R.196, D:R.196, D:N.263, C:R.375 pi-Stacking: D:Y.351 ANP.9: 20 residues within 4Å: Chain B: I.345, S.346, V.373, R.375 Chain F: A.165, G.166, V.167, G.168, K.169, T.170, V.171, E.195, R.196, E.199, Y.351, F.424, A.427, F.430, T.431 Ligands: MG.10 16 PLIP interactions: 12 interactions with chain F, 4 interactions with chain B Hydrogen bonds: F:G.166, F:V.167, F:G.168, F:K.169, F:K.169, F:K.169, F:T.170, F:V.171, F:R.196, F:R.196, B:S.346, B:R.375, B:R.375 pi-Stacking: F:Y.351, F:Y.351 Salt bridges: B:R.375

5 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.178 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.178 MG.4: 2 residues within 4Å: Chain B: T.178 Ligands: ANP.3 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.178 MG.6: 3 residues within 4Å: Chain C: T.178, D.271 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.178 MG.8: 4 residues within 4Å: Chain D: K.169, T.170, D.262 Ligands: ANP.7 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.170 MG.10: 4 residues within 4Å: Chain F: T.170, E.195, E.199 Ligands: ANP.9 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:T.170, F:E.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arsenieva, D. et al., Crystal structures of mutant forms of the yeast f1 ATPase reveal two modes of uncoupling. J.Biol.Chem. (2010)

Release Date

2010-09-15

Peptides

ATP synthase subunit alpha: ABC
ATP synthase subunit beta: DEF
ATP synthase subunit gamma: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
S

B
T

C
U

D
V

E
W

F
X

G
Y

ATP synthase subunit alpha

ATP synthase subunit beta

ATP synthase subunit gamma

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