SMTL ID : 3h0g.1 (1 other biounit)

RNA Polymerase II from Schizosaccharomyces pombe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.65 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.109, C.112, C.150, G.174, C.175, G.176 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.109, A:C.112, A:C.150 ZN.2: 7 residues within 4Å: Chain A: L.60, G.61, C.69, C.72, C.79, P.80, H.82 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.69, A:C.79, A:H.82 ZN.4: 5 residues within 4Å: Chain B: C.1152, C.1155, C.1170, S.1172, C.1173 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.1152, B:C.1155, B:C.1173 ZN.5: 4 residues within 4Å: Chain C: C.90, C.92, C.96, C.99 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.90 ZN.6: 5 residues within 4Å: Chain I: C.7, C.10, C.29, N.31, C.32 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.10, I:C.29, I:C.32 ZN.7: 5 residues within 4Å: Chain I: C.75, C.78, H.79, C.103, C.106 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:C.103, I:C.106 ZN.8: 5 residues within 4Å: Chain J: C.7, S.9, C.10, C.44, C.45 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:C.7, J:S.9, J:C.10, J:C.44, J:C.45 ZN.9: 5 residues within 4Å: Chain L: C.24, C.27, C.41, C.44, G.45 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.24, L:C.27, L:C.44

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spahr, H. et al., Schizosacharomyces pombe RNA polymerase II at 3.6-A resolution. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-08-25

Peptides

DNA-directed RNA polymerase II subunit rpb1: A
DNA-directed RNA polymerase II subunit RPB2: B
DNA-directed RNA polymerase II subunit RPB3: C
DNA-directed RNA polymerase II subunit rpb4: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase II subunit rpb7: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase II subunit RPB9: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerase II subunit RPB11: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA-directed RNA polymerase II subunit rpb1

DNA-directed RNA polymerase II subunit RPB2

DNA-directed RNA polymerase II subunit RPB3

DNA-directed RNA polymerase II subunit rpb4

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase II subunit rpb7

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase II subunit RPB9

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerase II subunit RPB11

DNA-directed RNA polymerases I, II, and III subunit RPABC4

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