SMTL ID : 7aod.1

Schizosaccharomyces pombe RNA polymerase I (dimer)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.63, T.65, C.66, C.73, H.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:C.73, A:H.76 ZN.2: 6 residues within 4Å: Chain A: C.103, Y.105, C.106, C.228, C.231, S.233 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.103, A:C.228, A:C.231, A:S.233 ZN.3: 5 residues within 4Å: Chain B: C.1089, C.1092, C.1115, S.1117, C.1118 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1089, B:C.1092, B:C.1115, B:S.1117 ZN.4: 5 residues within 4Å: Chain I: C.10, C.13, L.17, C.27, C.30 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.10, I:C.13, I:C.27, I:C.30 ZN.5: 5 residues within 4Å: Chain J: C.7, S.9, C.10, C.44, C.45 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:C.7, J:S.9, J:C.10, J:C.44, J:C.45 ZN.6: 7 residues within 4Å: Chain L: C.24, D.26, C.27, C.41, C.44, G.45, H.46 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:C.24, L:D.26, L:C.27, L:C.41, L:C.44 ZN.7: 5 residues within 4Å: Chain M: C.63, T.65, C.66, C.73, H.76 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.63, M:C.66, M:C.73, M:H.76 ZN.8: 6 residues within 4Å: Chain M: C.103, Y.105, C.106, C.228, C.231, S.233 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.103, M:C.228, M:C.231, M:S.233 ZN.9: 5 residues within 4Å: Chain N: C.1089, C.1092, C.1115, S.1117, C.1118 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.1089, N:C.1092, N:C.1115, N:S.1117 ZN.10: 5 residues within 4Å: Chain U: C.10, C.13, L.17, C.27, C.30 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:C.10, U:C.13, U:C.27, U:C.30 ZN.11: 5 residues within 4Å: Chain V: C.7, S.9, C.10, C.44, C.45 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:C.7, V:S.9, V:C.10, V:C.44, V:C.45 ZN.12: 7 residues within 4Å: Chain X: C.24, D.26, C.27, C.41, C.44, G.45, H.46 5 PLIP interactions: 5 interactions with chain X Metal complexes: X:C.24, X:D.26, X:C.27, X:C.41, X:C.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heiss, F.B. et al., Conserved strategies of RNA polymerase I hibernation and activation. Nat Commun (2021)

Release Date

2021-02-24

Peptides

DNA-directed RNA polymerase I subunit rpa1: AM
Probable DNA-directed RNA polymerase I subunit RPA2: BN
DNA-directed RNA polymerases I and III subunit RPAC1: CO
DNA-directed RNA polymerase I subunit rpa14: DP
DNA-directed RNA polymerases I, II, and III subunit RPABC1: EQ
DNA-directed RNA polymerases I, II, and III subunit RPABC2: FR
DNA-directed RNA polymerase I subunit rpa43: GS
DNA-directed RNA polymerases I, II, and III subunit RPABC3: HT
DNA-directed RNA polymerase I subunit RPA12: IU
DNA-directed RNA polymerases I, II, and III subunit RPABC5: JV
DNA-directed RNA polymerases I and III subunit RPAC2: KW
DNA-directed RNA polymerases I, II, and III subunit RPABC4: LX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

M
M

B
B

N
N

C
C

O
O

D
D

P
P

E
E

Q
Q

F
F

R
R

G
G

S
S

H
H

T
T

I
I

U
U

J
J

V
V

K
K

W
W

L
L

X
X

DNA-directed RNA polymerase I subunit rpa1

Probable DNA-directed RNA polymerase I subunit RPA2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit rpa14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit rpa43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

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