SMTL ID : 7aoe.1

Schizosaccharomyces pombe RNA polymerase I (elongation complex)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.63, C.66, C.73, H.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.63, A:C.66, A:C.73, A:H.76 ZN.2: 4 residues within 4Å: Chain A: C.103, C.106, C.228, C.231 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.103, A:C.106, A:C.228, A:C.231 ZN.3: 4 residues within 4Å: Chain B: C.1089, C.1092, C.1115, C.1118 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1089, B:C.1092, B:C.1115, B:C.1118 ZN.4: 6 residues within 4Å: Chain I: C.10, C.13, N.15, L.17, C.27, C.30 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.10, I:C.13, I:C.27, I:C.30 ZN.5: 6 residues within 4Å: Chain J: C.7, S.9, C.10, G.11, C.44, C.45 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:C.7, J:C.44, J:C.45 ZN.6: 5 residues within 4Å: Chain L: C.24, C.27, C.41, C.44, H.46 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.24, L:C.27, L:C.41, L:C.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heiss, F.B. et al., Conserved strategies of RNA polymerase I hibernation and activation. Nat Commun (2021)

Release Date

2021-02-24

Peptides

DNA-directed RNA polymerase I subunit rpa1: A
Probable DNA-directed RNA polymerase I subunit RPA2: B
DNA-directed RNA polymerases I and III subunit RPAC1: C
DNA-directed RNA polymerase I subunit rpa14: D
DNA-directed RNA polymerases I, II, and III subunit RPABC1: E
DNA-directed RNA polymerases I, II, and III subunit RPABC2: F
DNA-directed RNA polymerase I subunit rpa43: G
DNA-directed RNA polymerases I, II, and III subunit RPABC3: H
DNA-directed RNA polymerase I subunit RPA12: I
DNA-directed RNA polymerases I, II, and III subunit RPABC5: J
DNA-directed RNA polymerases I and III subunit RPAC2: K
DNA-directed RNA polymerases I, II, and III subunit RPABC4: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

DNA-directed RNA polymerase I subunit rpa1

Probable DNA-directed RNA polymerase I subunit RPA2

DNA-directed RNA polymerases I and III subunit RPAC1

DNA-directed RNA polymerase I subunit rpa14

DNA-directed RNA polymerases I, II, and III subunit RPABC1

DNA-directed RNA polymerases I, II, and III subunit RPABC2

DNA-directed RNA polymerase I subunit rpa43

DNA-directed RNA polymerases I, II, and III subunit RPABC3

DNA-directed RNA polymerase I subunit RPA12

DNA-directed RNA polymerases I, II, and III subunit RPABC5

DNA-directed RNA polymerases I and III subunit RPAC2

DNA-directed RNA polymerases I, II, and III subunit RPABC4

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