SMTL ID : 3h5s.2 (1 other biounit)

Hepatitis C virus polymerase NS5B with saccharin inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x H5S: (5S)-5-TERT-BUTYL-1-(4-FLUORO-3-METHYLBENZYL)-4-HYDROXY-3-[8-(METHYLSULFONYL)-1,1-DIOXIDO-6,7,8,9-TETRAHYDROISOTHIAZOLO[4,5-H]ISOQUINOLIN-3-YL]-1,5-DIHYDRO-2H-PYRROL-2-ONE(Non-covalent)

H5S.1: 20 residues within 4Å: Chain A: F.199, P.203, R.206, S.294, N.297, N.322, G.323, D.324, D.325, C.372, S.374, L.390, N.417, M.420, Y.421, Q.452, I.453, Y.454, G.455, S.562 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.203, A:D.325, A:L.390, A:Y.421, A:Y.421 Hydrogen bonds: A:N.297, A:D.324, A:Q.452, A:Y.454, A:G.455, A:S.562 Water bridges: A:S.562, A:S.562 Salt bridges: A:D.324 pi-Stacking: A:F.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vicente, J. et al., Non-nucleoside inhibitors of HCV polymerase NS5B. Part 4: structure-based design, synthesis, and biological evaluation of benzo[d]isothiazole-1,1-dioxides. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-09-08

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA-directed RNA polymerase

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