SMTL ID : 3h5u.1 (1 other biounit)

Hepatitis C virus polymerase NS5B with saccharin inhibitor 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x H5U: N-({3-[(5S)-5-tert-butyl-1-(4-fluorobenzyl)-4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]-1,1-dioxido-1,2-benzisothiazol-7-yl}methyl)methanesulfonamide(Non-covalent)

H5U.1: 20 residues within 4Å: Chain A: F.199, P.203, R.206, S.294, N.297, N.322, G.323, D.324, D.325, C.372, L.390, G.416, N.417, M.420, Y.421, Q.452, I.453, Y.454, G.455, S.562 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:N.322, A:D.325, A:M.420, A:Y.421, A:Y.421, A:I.453, A:Y.454 Hydrogen bonds: A:N.297, A:D.324, A:D.324, A:Y.454, A:G.455, A:S.562 Water bridges: A:Q.452, A:Y.561, A:S.562 pi-Stacking: A:F.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vicente, J. et al., Non-nucleoside inhibitors of HCV polymerase NS5B. Part 4: structure-based design, synthesis, and biological evaluation of benzo[d]isothiazole-1,1-dioxides. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-09-08

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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