- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 1 x FLC: CITRATE ANION(Non-covalent)
- 3 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
U5P.34: 15 residues within 4Å:- Chain A: V.12, T.188, Y.189, R.192, F.223, R.227, G.340, Y.341, S.378, G.379, H.380, E.402, K.405
- Ligands: SO4.17, SO4.32
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:T.188, A:Y.189
- Hydrogen bonds: A:Y.189, A:R.192, A:R.192, A:Y.341, A:G.379, A:H.380, A:E.402, A:K.405
- Water bridges: A:E.402, A:E.402
- Salt bridges: A:R.227
- pi-Stacking: A:Y.341
U5P.35: 10 residues within 4Å:- Chain A: R.2, V.4, F.6, L.20, R.25, G.46, F.47, G.426, E.427, G.428
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.48, A:G.426, A:G.428
- Salt bridges: A:R.2, A:R.25
U5P.36: 3 residues within 4Å:- Chain A: L.88, E.91, R.263
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.263
- 2 x ZN: ZINC ION(Non-covalent)
ZN.37: 5 residues within 4Å:- Chain A: D.63, H.64, D.162, H.400
- Ligands: ZN.38
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.63, A:D.162, A:H.400
ZN.38: 5 residues within 4Å:- Chain A: H.59, H.61, H.141, D.162
- Ligands: ZN.37
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.61, A:H.141, A:D.162, H2O.1
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, H. et al., Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP. To be Published
- Release Date
- 2010-07-28
- Peptides
- Ribonuclease TTHA0252: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 32 x SO4: SULFATE ION(Non-functional Binders)
- 1 x FLC: CITRATE ANION(Non-covalent)
- 3 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, H. et al., Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP. To be Published
- Release Date
- 2010-07-28
- Peptides
- Ribonuclease TTHA0252: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A