- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 2 x SSU- SSU: RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3')(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: V.290, V.291, E.292, H.293, A.296
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.292, A:H.293
- Salt bridges: A:H.293
SO4.4: 1 residues within 4Å:- Chain A: R.354
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.354
SO4.5: 3 residues within 4Å:- Chain A: R.24, L.129, G.130
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.130
- Salt bridges: A:R.24
SO4.6: 4 residues within 4Å:- Chain A: R.84, L.88, R.263, R.266
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.266
- Salt bridges: A:R.84, A:R.263
SO4.7: 1 residues within 4Å:- Chain A: R.155
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.155
SO4.8: 2 residues within 4Å:- Chain A: R.10, R.424
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:R.10, A:R.424
SO4.9: 2 residues within 4Å:- Chain A: R.10, R.424
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.10
- Salt bridges: A:R.424
SO4.10: 5 residues within 4Å:- Chain A: L.171, P.172, D.173, S.269, E.270
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.173, A:E.270
SO4.11: 1 residues within 4Å:- Chain A: E.153
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.153
- Water bridges: A:M.1, A:M.1, A:E.153
SO4.12: 3 residues within 4Å:- Chain A: H.42, P.104, F.105
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.42
SO4.13: 7 residues within 4Å:- Chain A: Y.189, R.227, G.340, Y.341, S.378, G.379
- Ligands: SSU-SSU.2
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.341, A:S.378, A:G.379, A:H.380
- Salt bridges: A:R.227
SO4.14: 1 residues within 4Å:- Chain A: R.424
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.424
- 2 x ZN: ZINC ION(Non-covalent)
ZN.15: 5 residues within 4Å:- Chain A: D.63, H.64, D.162, H.400
- Ligands: ZN.16
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.63, A:H.64, A:D.162, A:H.400
ZN.16: 6 residues within 4Å:- Chain A: H.59, H.61, H.141, D.162
- Ligands: SSU-SSU.2, ZN.15
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.59, A:H.61, A:H.141, A:D.162
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, H. et al., Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog. To be Published
- Release Date
- 2010-07-28
- Peptides
- Ribonuclease TTHA0252: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- monomer
- Ligands
- 2 x SSU- SSU: RNA (5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3')(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, H. et al., Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with RNA analog. To be Published
- Release Date
- 2010-07-28
- Peptides
- Ribonuclease TTHA0252: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C