SMTL ID : 3ijs.1 (1 other biounit)

Structure of S67-27 in Complex with TSBP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GP4- KDO- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)-2-amino-2-deoxy-4-O-phosphono-alpha-D-glucopyranose

GP4-KDO-KDO.1: 11 residues within 4Å: Chain A: N.31, R.33, Y.38, S.97, N.98, R.101 Chain B: Y.33, R.52, K.56, I.102, E.111 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.33, B:R.52 Hydrophobic interactions: B:I.102 Hydrogen bonds: A:N.31, A:S.97, A:N.98, A:R.101, A:R.101

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: T.60, E.61 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen. Glycobiology (2010)

Release Date

2009-10-06

Peptides

Immunoglobulin light chain (IGG3): A
Immunoglobulin heavy chain (IGG3): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin light chain (IGG3)

Immunoglobulin heavy chain (IGG3)

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