SMTL ID : 3ikc.1 (1 other biounit)

Structure of S67-27 in Complex with Kdo(2.8)-7-O-methyl-Kdo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KME- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-(1E)-prop-1-en-1-yl 3-deoxy-7-O-methyl-alpha-D-manno-oct-2-ulopyranosidonic acid(Non-covalent)

KME-KDO.1: 14 residues within 4Å: Chain A: N.31, R.33, Y.38, S.97, N.98, N.99, R.101 Chain B: Y.33, R.52, K.56, I.102, P.104, Y.109, E.111 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.31, A:R.33, A:S.97, A:L.100, A:R.101, A:R.101, B:Y.33, B:Y.33, B:K.56, A:R.33, A:R.33 Salt bridges: B:R.52, B:K.56 Water bridges: B:Y.109

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: R.52, T.59, E.61 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., The role of CDR H3 in antibody recognition of a synthetic analog of a lipopolysaccharide antigen. Glycobiology (2010)

Release Date

2009-10-06

Peptides

Immunoglobulin light chain (IGG3): A
Immunoglobulin heavy chain (IGG3): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin light chain (IGG3)

Immunoglobulin heavy chain (IGG3)

Related Entries With Identical Sequence