SMTL ID : 3ipq.1

X-ray structure of GW3965 synthetic agonist bound to the LXR-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 965: [3-(3-{[2-chloro-3-(trifluoromethyl)benzyl](2,2-diphenylethyl)amino}propoxy)phenyl]acetic acid(Non-covalent)

965.1: 26 residues within 4Å: Chain A: F.93, T.94, L.96, A.97, S.100, E.103, I.131, M.134, L.135, T.138, R.141, I.149, F.151, L.152, F.162, L.167, F.171, I.172, I.175, F.176, H.257, Q.260, V.261, L.264, L.271, W.279 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:L.96, A:A.97, A:I.131, A:M.134, A:L.135, A:I.149, A:F.151, A:F.151, A:L.152, A:F.162, A:F.171, A:F.171, A:I.172, A:I.175, A:I.175, A:I.175, A:I.175, A:F.176, A:W.279, A:W.279 Hydrogen bonds: A:L.152 Water bridges: A:R.141, A:K.153 Salt bridges: A:R.141 pi-Stacking: A:F.162 965.3: 26 residues within 4Å: Chain C: F.93, T.94, L.96, A.97, S.100, E.103, I.131, M.134, L.135, T.138, R.141, I.149, F.151, L.152, F.162, L.167, F.171, I.172, I.175, F.176, H.257, Q.260, V.261, L.264, L.271, W.279 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:L.96, C:A.97, C:I.131, C:M.134, C:L.135, C:I.149, C:F.151, C:F.151, C:L.152, C:F.162, C:F.171, C:F.171, C:I.172, C:I.175, C:I.175, C:I.175, C:I.175, C:F.176, C:W.279, C:W.279 Hydrogen bonds: C:L.152 Water bridges: C:R.141, C:K.153 Salt bridges: C:R.141 pi-Stacking: C:F.162

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.119 Chain B: H.16, Q.20 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.20 Salt bridges: B:H.16, A:R.119 SO4.4: 3 residues within 4Å: Chain C: R.119 Chain D: H.16, Q.20 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:Q.20 Salt bridges: D:H.16, C:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fradera, X. et al., X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling. J.Mol.Biol. (2010)

Release Date

2010-06-02

Peptides

Oxysterols receptor LXR-alpha: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

Oxysterols receptor LXR-alpha

Nuclear receptor coactivator 1

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