SMTL ID : 1fm6.1 (1 other biounit)

THE 2.1 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE HETERODIMER OF THE HUMAN RXRALPHA AND PPARGAMMA LIGAND BINDING DOMAINS RESPECTIVELY BOUND WITH 9-CIS RETINOIC ACID AND ROSIGLITAZONE AND CO-ACTIVATOR PEPTIDES.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-2-mer

Ligands

1 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.1: 14 residues within 4Å: Chain A: I.44, A.47, A.48, Q.51, W.81, F.89, R.92, L.102, A.103, V.118, I.121, C.208, H.211, L.212 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.44, A:A.48, A:Q.51, A:W.81, A:F.89, A:F.89, A:F.89, A:L.102, A:V.118, A:V.118, A:I.121, A:H.211, A:L.212 Hydrogen bonds: A:A.103 Salt bridges: A:R.92

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.2: 17 residues within 4Å: Chain B: I.76, F.77, G.79, C.80, S.84, H.118, Y.122, L.125, V.134, I.136, M.143, L.148, M.159, H.244, L.248, L.264, Y.268 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.76 Hydrogen bonds: B:S.84, B:Y.268 Water bridges: B:S.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gampe Jr., R.T. et al., Asymmetry in the PPARgamma/RXRalpha crystal structure reveals the molecular basis of heterodimerization among nuclear receptors. Mol.Cell (2000)

Release Date

2001-02-16

Peptides

RETINOIC ACID RECEPTOR RXR-ALPHA: A
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA: B
STEROID RECEPTOR COACTIVATOR: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
E

RETINOIC ACID RECEPTOR RXR-ALPHA

PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA

STEROID RECEPTOR COACTIVATOR

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