SMTL ID : 4dm6.1 (1 other biounit)

Crystal structure of RARb LBD homodimer in complex with TTNPB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TTB: 4-[(1E)-2-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRONAPHTHALEN-2-YL)PROP-1-ENYL]BENZOIC ACID(Non-covalent)

TTB.1: 20 residues within 4Å: Chain A: F.45, F.74, L.77, A.78, C.81, L.112, L.115, I.116, I.119, R.122, F.132, S.133, G.147, F.148, L.151, G.237, R.240, V.241, L.244, L.260 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.77, A:L.112, A:L.115, A:L.115, A:I.116, A:I.119, A:I.119, A:F.132, A:F.132, A:F.148, A:F.148, A:L.151, A:R.240, A:V.241, A:L.244, A:L.260 Hydrogen bonds: A:S.133 Water bridges: A:S.133 Salt bridges: A:R.122 pi-Stacking: A:F.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osz, J. et al., Structural basis for a molecular allosteric control mechanism of cofactor binding to nuclear receptors. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-03-07

Peptides

Retinoic acid receptor beta: A
Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Retinoic acid receptor beta

Nuclear receptor coactivator 1

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