SMTL ID : 3ips.1

X-ray structure of benzisoxazole synthetic agonist bound to the LXR-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.119 Chain C: H.16, Q.20 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Q.20 Salt bridges: C:H.16, A:R.119 SO4.4: 3 residues within 4Å: Chain B: R.119 Chain D: H.16, Q.20 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Q.20 Salt bridges: D:H.16, B:R.119

2 x O90: {3-chloro-4-[(3-{[7-propyl-3-(trifluoromethyl)-1,2-benzisoxazol-6-yl]oxy}propyl)sulfanyl]phenyl}acetic acid(Non-covalent)

O90.2: 18 residues within 4Å: Chain A: F.93, T.94, L.96, A.97, S.100, M.134, L.135, E.137, T.138, R.141, F.151, L.152, F.171, H.257, Q.260, L.264, L.271, W.279 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.93, A:L.96, A:L.96, A:A.97, A:L.135, A:F.151 Hydrogen bonds: A:L.152 Salt bridges: A:R.141 Halogen bonds: A:M.134 O90.3: 19 residues within 4Å: Chain B: F.93, T.94, L.96, A.97, S.100, E.103, L.135, E.137, T.138, R.141, F.151, L.152, L.167, F.171, H.257, Q.260, L.264, L.271, W.279 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:F.93, B:L.96, B:A.97, B:L.135, B:F.151 Hydrogen bonds: B:L.152, B:K.153 Salt bridges: B:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fradera, X. et al., X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling. J.Mol.Biol. (2010)

Release Date

2010-06-02

Peptides

Oxysterols receptor LXR-alpha: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxysterols receptor LXR-alpha

Nuclear receptor coactivator 1

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