SMTL ID : 3ipu.1

X-ray structure of benzisoxazole urea synthetic agonist bound to the LXR-alpha

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x O40: 4-{[methyl(3-{[7-propyl-3-(trifluoromethyl)-1,2-benzisoxazol-6-yl]oxy}propyl)carbamoyl]amino}benzoic acid(Non-covalent)

O40.1: 20 residues within 4Å: Chain A: N.61, R.68, F.93, T.94, L.96, A.97, S.100, I.131, M.134, T.138, R.141, F.151, F.162, L.167, F.171, H.257, L.264, L.271, L.275, W.279 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.93, A:L.96, A:A.97, A:I.131, A:F.151, A:F.151, A:F.162 Hydrogen bonds: A:N.61 Water bridges: A:R.68, A:S.100 Salt bridges: A:R.68, A:K.153 pi-Cation interactions: A:R.68 O40.2: 17 residues within 4Å: Chain B: N.61, R.68, F.93, T.94, L.96, A.97, I.131, M.134, T.138, R.141, F.151, K.153, L.167, F.171, H.257, L.264, L.271 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.93, B:L.96, B:A.97, B:I.131, B:F.151, B:F.151 Hydrogen bonds: B:N.61, B:N.61 Salt bridges: B:R.68, B:K.153 pi-Cation interactions: B:R.68

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: R.119 Chain D: H.16, Q.20 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:Q.20 Salt bridges: D:H.16, B:R.119 SO4.4: 3 residues within 4Å: Chain A: R.119 Chain C: H.16, Q.20 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Water bridges: A:R.119 Salt bridges: A:R.119, C:H.16 Hydrogen bonds: C:Q.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fradera, X. et al., X-ray structures of the LXRalpha LBD in its homodimeric form and implications for heterodimer signaling. J.Mol.Biol. (2010)

Release Date

2010-06-02

Peptides

Oxysterols receptor LXR-alpha: AB
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxysterols receptor LXR-alpha

Nuclear receptor coactivator 1

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